Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LXF01_RS01100 Genome accession   NZ_CP090067
Coordinates   235600..237165 (-) Length   521 a.a.
NCBI ID   WP_111884855.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 230600..242165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS01085 (LXF01_01085) gpmI 231390..232937 (+) 1548 WP_180077179.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LXF01_RS01090 (LXF01_01090) - 232955..234130 (+) 1176 WP_233944918.1 S41 family peptidase -
  LXF01_RS01095 (LXF01_01095) pilR 234153..235580 (-) 1428 WP_267967499.1 sigma-54 dependent transcriptional regulator Regulator
  LXF01_RS01100 (LXF01_01100) pilS 235600..237165 (-) 1566 WP_111884855.1 ATP-binding protein Regulator
  LXF01_RS01105 (LXF01_01105) - 237188..237823 (-) 636 WP_078189449.1 response regulator -
  LXF01_RS01110 (LXF01_01110) - 238036..239085 (+) 1050 WP_233945407.1 serine hydrolase -
  LXF01_RS01115 (LXF01_01115) thrC 239208..240347 (-) 1140 WP_233944920.1 threonine synthase -
  LXF01_RS01120 (LXF01_01120) - 240410..241714 (-) 1305 WP_078192857.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59859.49 Da        Isoelectric Point: 6.6796

>NTDB_id=640525 LXF01_RS01100 WP_111884855.1 235600..237165(-) (pilS) [Acinetobacter sp. SH20PTE14]
MTQRSIHSELNQYHLGLWYSAYRFIISACLLLVFLLTYTQFTSDYEYPRLYLYVLTIYLLFTSIQFMSLGRFKVRIPNQL
LLLFIVDVISLSLLTLAIDGPNLHLSLLFVITIFAASLLLDAQKALVITLIAVICVVYQLFLGSILEFTSLKNLTNSAIL
AFLFCVVYGSAQIAVKRFQLLENLNFSQSLELHRLQNINRYILEQIDTGYLVLDENCHVVLSNPAACHLLGMPNSYHHDQ
YPLYTTQPDLFELLKFEDLKSGEKFQFESQQSQYHIQVLVQKLVVPHQMLTLLILQDAQKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVHANDLYPQSDTEQQHMLNHMISRQAVRIDRIIQDTLNMVRNKETHPTRLNLEQFLPLFLQEDLADIQQ
NIRLNVQAKTLIDFDEAQFRQILINLIRNAIRHNNPDMSYIEVVARTDQKKVQIDVRDFGHGVALQNRAQLFQPFFSTEI
TGTGLGLYLAHSFCEANQAQLSYVEQKQGACFRIECLQAVI

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=640525 LXF01_RS01100 WP_111884855.1 235600..237165(-) (pilS) [Acinetobacter sp. SH20PTE14]
ATGACACAGCGTTCAATTCATAGTGAATTGAACCAGTATCATTTAGGCCTTTGGTACAGTGCTTATCGCTTTATCATCAG
TGCCTGTCTGTTACTGGTCTTTTTACTGACCTACACTCAATTCACTTCAGATTATGAATACCCACGTTTATACCTATATG
TATTGACGATTTATTTGCTGTTTACCAGCATTCAATTCATGTCGCTTGGACGCTTCAAAGTCCGTATTCCAAACCAGCTA
CTGCTGTTATTCATCGTAGATGTGATTTCGCTGAGCTTACTGACCTTAGCCATCGATGGACCCAATTTACATTTGAGTTT
GCTGTTTGTGATTACGATTTTTGCAGCATCCCTGTTATTAGATGCCCAAAAAGCCTTGGTCATCACCCTCATCGCTGTGA
TCTGTGTGGTATATCAACTGTTTTTAGGTTCAATTCTTGAATTTACCTCACTTAAAAATTTAACCAACAGTGCGATTTTG
GCTTTTTTATTTTGTGTAGTGTATGGCAGTGCGCAAATTGCCGTGAAACGTTTCCAGTTATTAGAAAATCTGAATTTTTC
GCAATCCTTAGAGCTCCATCGGCTACAAAACATTAATCGCTATATTTTAGAGCAGATTGACACGGGCTATTTAGTATTGG
ATGAAAACTGTCATGTGGTGTTGAGTAATCCTGCTGCTTGCCATTTACTCGGCATGCCAAATTCTTATCATCATGACCAA
TATCCACTGTATACCACGCAGCCCGATTTATTTGAATTACTCAAATTTGAAGATTTAAAAAGCGGTGAAAAATTCCAATT
TGAATCCCAACAAAGCCAATACCACATTCAGGTACTGGTACAAAAACTCGTTGTGCCGCATCAAATGCTGACCTTGCTGA
TTTTACAAGATGCACAAAAACTCAATCAGCAAGTGCAACAACTAAAATTAGCCGCTTTAGGGCAACTCTCCGCCAGTATT
GCCCACGAAATTCGCAATCCTTTAGCCGCAATTGTGCATGCCAATGATTTATATCCGCAAAGTGATACCGAACAACAGCA
CATGTTGAATCATATGATTTCACGTCAAGCGGTGCGGATTGACCGAATTATTCAAGACACCCTAAATATGGTGCGCAATA
AGGAAACCCATCCGACTCGTCTAAATCTAGAACAATTTTTACCGCTGTTCCTGCAAGAAGATCTGGCAGACATTCAACAG
AACATTCGGCTCAATGTGCAAGCCAAAACCTTGATTGATTTTGATGAGGCACAGTTCAGACAAATTTTAATCAACCTAAT
TCGTAATGCGATTCGCCATAACAATCCGGACATGTCGTATATCGAAGTGGTGGCGCGTACCGATCAGAAAAAAGTCCAGA
TCGATGTCCGAGATTTTGGTCATGGGGTTGCTTTACAAAACCGCGCACAGTTATTTCAACCATTTTTTAGTACCGAAATT
ACTGGAACTGGTTTAGGATTATATCTTGCTCATAGCTTCTGTGAAGCGAATCAAGCACAGCTTTCCTATGTAGAACAAAA
ACAGGGAGCTTGCTTTAGGATTGAGTGCTTACAAGCTGTTATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.832

96.929

0.551