Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PALA20_RS07235 Genome accession   NZ_CP107064
Coordinates   1526335..1526958 (+) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain PALA20     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521335..1531958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA20_RS07210 (PALA20_01432) - 1522420..1522647 (-) 228 WP_003097347.1 DUF1161 domain-containing protein -
  PALA20_RS07215 (PALA20_01433) - 1522831..1523046 (-) 216 WP_003097345.1 dodecin -
  PALA20_RS07220 (PALA20_01434) trpI 1523147..1524034 (-) 888 WP_003097343.1 trpBA operon transcriptional activator TrpI -
  PALA20_RS07225 (PALA20_01435) trpB 1524138..1525346 (+) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  PALA20_RS07230 (PALA20_01436) trpA 1525343..1526149 (+) 807 WP_003097337.1 tryptophan synthase subunit alpha -
  PALA20_RS07235 (PALA20_01437) letA 1526335..1526958 (+) 624 WP_003111192.1 response regulator transcription factor Regulator
  PALA20_RS07240 (PALA20_01438) - 1526966..1527331 (+) 366 WP_003097330.1 Hpt domain-containing protein -
  PALA20_RS07245 (PALA20_01439) - 1527310..1527687 (-) 378 WP_003097328.1 DOPA 4,5-dioxygenase family protein -
  PALA20_RS07250 (PALA20_01440) - 1527698..1528612 (-) 915 WP_003122286.1 choline sulfate utilization transcriptional regulator -
  PALA20_RS07255 (PALA20_01441) betC 1528725..1530236 (+) 1512 WP_003097323.1 choline-sulfatase -
  PALA20_RS07260 (PALA20_01442) - 1530253..1531176 (+) 924 WP_003097322.1 choline ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=640361 PALA20_RS07235 WP_003111192.1 1526335..1526958(+) (letA) [Pseudomonas aeruginosa strain PALA20]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=640361 PALA20_RS07235 WP_003111192.1 1526335..1526958(+) (letA) [Pseudomonas aeruginosa strain PALA20]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAACACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362