Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ODQ18_RS10645 Genome accession   NZ_CP107039
Coordinates   2044322..2044969 (-) Length   215 a.a.
NCBI ID   WP_041851036.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2039322..2049969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS10620 (ODQ18_10620) nsrR 2040918..2041358 (+) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -
  ODQ18_RS10625 (ODQ18_10625) lytF 2041512..2042978 (+) 1467 WP_041851034.1 peptidoglycan endopeptidase LytF -
  ODQ18_RS10630 (ODQ18_10630) yhdC 2043020..2043343 (-) 324 WP_041851035.1 YqzG/YhdC family protein -
  ODQ18_RS10635 (ODQ18_10635) yhdB 2043544..2043786 (+) 243 WP_003233373.1 YhdB family protein -
  ODQ18_RS10640 (ODQ18_10640) yhdA 2043801..2044325 (-) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  ODQ18_RS10645 (ODQ18_10645) vraR 2044322..2044969 (-) 648 WP_041851036.1 two-component system response regulator YhcZ Regulator
  ODQ18_RS10650 (ODQ18_10650) yhcY 2044966..2046105 (-) 1140 WP_041851037.1 two-component system sensor histidine kinase YhcY -
  ODQ18_RS10655 (ODQ18_10655) pgcA 2046254..2047999 (-) 1746 WP_041851038.1 phosphoglucomutase -
  ODQ18_RS10660 (ODQ18_10660) glpD 2048131..2049798 (-) 1668 WP_041851039.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24190.87 Da        Isoelectric Point: 6.5033

>NTDB_id=640282 ODQ18_RS10645 WP_041851036.1 2044322..2044969(-) (vraR) [Bacillus subtilis strain 11060]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSKAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=640282 ODQ18_RS10645 WP_041851036.1 2044322..2044969(-) (vraR) [Bacillus subtilis strain 11060]
ATGAAAATTGTAATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTA
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTAAAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4