Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LWM38_RS20935 Genome accession   NZ_CP090019
Coordinates   3015632..3016345 (+) Length   237 a.a.
NCBI ID   WP_326483238.1    Uniprot ID   -
Organism   Vibrio kanaloae strain KH-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3010632..3021345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS13565 (LWM38_13565) - 3011556..3013886 (+) 2331 WP_233894333.1 Tex family protein -
  LWM38_RS13570 (LWM38_13570) - 3014095..3014568 (-) 474 WP_017055619.1 hypothetical protein -
  LWM38_RS13575 (LWM38_13575) bioH 3014762..3015538 (-) 777 WP_017055618.1 pimeloyl-ACP methyl ester esterase BioH -
  LWM38_RS20935 comF 3015632..3016345 (+) 714 WP_326483238.1 ComF family protein Machinery gene
  LWM38_RS13585 (LWM38_13585) nfuA 3016455..3017039 (+) 585 WP_029626881.1 Fe-S biogenesis protein NfuA -
  LWM38_RS13590 (LWM38_13590) nudE 3017333..3017884 (+) 552 WP_017055616.1 ADP compounds hydrolase NudE -
  LWM38_RS13595 (LWM38_13595) cysQ 3017942..3018769 (+) 828 WP_233894335.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LWM38_RS13600 (LWM38_13600) - 3018889..3019668 (-) 780 WP_017055614.1 type II secretion system protein N -
  LWM38_RS13605 (LWM38_13605) - 3019670..3020158 (-) 489 WP_017055613.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27207.49 Da        Isoelectric Point: 8.9141

>NTDB_id=640270 LWM38_RS20935 WP_326483238.1 3015632..3016345(+) (comF) [Vibrio kanaloae strain KH-4]
MLSDWLQKHTPHLVTSQCHLCKLEKLLSDTHPRWCQTCLDLFCQQPRCQQCGLKTLTSVEQCGQCLSTPPPWHRLYCVGD
YVFPTAHYIQQMKYADKFWFARDLSKLLAPRIQHPAPLITSVPLHWGRYIHRGFNQSQLLAHYTAQELGVKSAVLFRRSR
STVSQQGLTKSARQINLKNAFTLRNMNFSTNNYSHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=640270 LWM38_RS20935 WP_326483238.1 3015632..3016345(+) (comF) [Vibrio kanaloae strain KH-4]
ATGTTATCCGATTGGCTACAAAAACACACACCGCATCTGGTCACATCACAATGCCACCTGTGCAAGCTAGAAAAGCTCCT
CAGCGATACTCATCCTCGATGGTGCCAAACTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAGCAATGTGGCTTGA
AAACCTTAACTAGCGTCGAGCAATGTGGTCAATGTCTATCGACTCCACCACCTTGGCATCGTCTCTATTGTGTGGGTGAC
TACGTCTTTCCAACAGCACACTATATCCAACAGATGAAATACGCCGATAAATTTTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACGTATTCAGCACCCAGCGCCATTGATCACTAGTGTGCCTCTACATTGGGGGCGGTATATTCATAGGGGCT
TTAATCAGAGCCAGTTATTAGCCCATTACACAGCCCAAGAGTTAGGCGTCAAGAGCGCGGTTTTATTTCGTCGATCTCGT
TCAACGGTTTCGCAGCAAGGATTAACCAAATCCGCAAGGCAGATCAATCTAAAAAACGCTTTCACGCTGCGCAATATGAA
TTTTTCAACGAACAATTATTCTCACATCGCGATAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

53.814

99.578

0.536
  comF Vibrio campbellii strain DS40M4

47.737

100

0.489