Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   LWM38_RS15100 Genome accession   NZ_CP090020
Coordinates   176841..177926 (+) Length   361 a.a.
NCBI ID   WP_017058675.1    Uniprot ID   A0A2N7JG46
Organism   Vibrio kanaloae strain KH-4     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 171841..182926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS15075 (LWM38_15075) - 172114..174693 (+) 2580 WP_233896449.1 ATP-binding protein -
  LWM38_RS15080 (LWM38_15080) - 174790..175104 (-) 315 WP_004730049.1 DUF496 family protein -
  LWM38_RS15085 (LWM38_15085) - 175299..175499 (+) 201 WP_017058678.1 hypothetical protein -
  LWM38_RS15090 (LWM38_15090) - 175564..176220 (+) 657 WP_017058677.1 YceH family protein -
  LWM38_RS15095 (LWM38_15095) - 176221..176535 (+) 315 WP_077681680.1 GIY-YIG nuclease family protein -
  LWM38_RS15100 (LWM38_15100) luxP 176841..177926 (+) 1086 WP_017058675.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  LWM38_RS15105 (LWM38_15105) luxQ 177926..180496 (+) 2571 WP_233896037.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  LWM38_RS15110 (LWM38_15110) - 180670..181329 (-) 660 WP_017058673.1 PilZ domain-containing protein -
  LWM38_RS15115 (LWM38_15115) - 181526..181876 (+) 351 WP_136980385.1 HopJ type III effector protein -
  LWM38_RS15120 (LWM38_15120) - 181964..182272 (-) 309 WP_077681677.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41104.32 Da        Isoelectric Point: 5.1561

>NTDB_id=640271 LWM38_RS15100 WP_017058675.1 176841..177926(+) (luxP) [Vibrio kanaloae strain KH-4]
MKRLLMLFGITVFSTSALSHALNGYWEYQDYLSKFPKQKILTDKMVEAVQNHPVPLRLVQDRPITISVVYPGQQISDYWV
RNIQAFEKRLDKLRINYQINQVFTRVNADINQQSISLQEAVENKTDYLIFTLDTTRHRKFIEHVLSYTDTKLILQNITTP
VRAWADRQPFMYVGFDHATGSLKLADYFKEVSQPDSQYSVLYRSEGYISDARGDTFIREVNSDTNFALKSSFYTKSDKES
SYQAAKISIENDKNLDFIYACSTDVALGAAEAIRESGRDILVNGWGGGSAELEAIESGDLDVTVMRMNDDTGIAMAEAIK
WDLSGLKVPTVYSGEFEVVTSEDSPERISELKKRAFRYSGQ

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=640271 LWM38_RS15100 WP_017058675.1 176841..177926(+) (luxP) [Vibrio kanaloae strain KH-4]
ATGAAACGTTTACTTATGTTGTTTGGAATTACCGTATTTTCTACGTCCGCTCTTTCCCACGCTCTCAATGGATATTGGGA
ATATCAAGATTACCTCTCTAAGTTTCCAAAGCAAAAAATATTGACCGATAAAATGGTCGAAGCTGTTCAAAACCACCCCG
TGCCATTGAGGTTAGTTCAAGATAGGCCTATTACTATTTCAGTCGTGTACCCTGGTCAACAGATTTCTGACTACTGGGTG
CGTAATATTCAAGCGTTTGAAAAGCGCCTCGATAAATTGAGAATCAACTACCAGATCAATCAGGTTTTTACACGTGTTAA
TGCTGATATCAATCAACAGAGTATTTCTCTACAAGAAGCGGTTGAAAATAAAACTGATTATTTAATTTTTACGTTAGATA
CGACGCGACACCGTAAATTTATTGAACATGTGCTGAGTTATACGGATACCAAACTGATCTTGCAAAATATTACCACTCCT
GTGCGCGCGTGGGCTGATAGACAGCCGTTTATGTATGTAGGTTTTGATCATGCGACAGGGAGTTTGAAATTGGCGGACTA
TTTTAAAGAAGTGAGTCAACCAGATAGTCAGTACTCTGTTCTTTATCGTTCAGAAGGTTATATAAGTGATGCTCGTGGAG
ATACCTTTATTCGTGAAGTGAACTCCGATACAAATTTTGCACTTAAGTCTTCGTTTTACACCAAGTCTGATAAAGAGAGC
AGTTACCAAGCGGCTAAAATCAGCATAGAGAACGATAAAAACCTAGACTTTATCTATGCATGTTCAACAGATGTTGCTTT
GGGAGCCGCTGAAGCGATTCGTGAGTCTGGTAGGGATATCTTAGTCAATGGTTGGGGAGGCGGATCGGCAGAACTCGAAG
CAATCGAAAGTGGGGACCTAGATGTGACAGTTATGCGTATGAATGACGATACTGGGATTGCGATGGCAGAGGCAATCAAA
TGGGATCTCAGTGGCTTGAAAGTTCCTACCGTTTACTCCGGTGAGTTTGAAGTGGTGACCAGCGAAGATTCCCCAGAACG
TATTTCTGAGCTTAAGAAGCGCGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(66-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JG46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.259

100

0.626