Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LWM38_RS02765 Genome accession   NZ_CP090019
Coordinates   560830..561435 (-) Length   201 a.a.
NCBI ID   WP_032547912.1    Uniprot ID   A0A120DGB0
Organism   Vibrio kanaloae strain KH-4     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 555830..566435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS02755 (LWM38_02755) aceF 557078..558964 (+) 1887 WP_146449375.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  LWM38_RS02760 (LWM38_02760) lpdA 559207..560637 (+) 1431 WP_017056618.1 dihydrolipoyl dehydrogenase -
  LWM38_RS02765 (LWM38_02765) opaR 560830..561435 (-) 606 WP_032547912.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  LWM38_RS02770 (LWM38_02770) hpt 561770..562300 (+) 531 WP_017056620.1 hypoxanthine phosphoribosyltransferase -
  LWM38_RS02775 (LWM38_02775) can 562405..563064 (-) 660 WP_046223321.1 carbonate dehydratase -
  LWM38_RS02780 (LWM38_02780) - 563351..564982 (+) 1632 WP_017056622.1 SulP family inorganic anion transporter -
  LWM38_RS02785 (LWM38_02785) - 565288..566205 (+) 918 WP_076655054.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23333.58 Da        Isoelectric Point: 6.2928

>NTDB_id=640249 LWM38_RS02765 WP_032547912.1 560830..561435(-) (opaR) [Vibrio kanaloae strain KH-4]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKKNLHNIATEMVNLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGDVCDEHDPK
HLANLFHGICYSLFIQAKRLETPEEQENLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=640249 LWM38_RS02765 WP_032547912.1 560830..561435(-) (opaR) [Vibrio kanaloae strain KH-4]
ATGGACTCAATATCTAAGAGGCCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGAGGTGGCCACGCAGATATCGCAGATATTGCTCAGGTATCTGTAGCAACTGTAT
TTAACTACTTCCCTACCCGAGAAGATCTGGTTGATGAAGTACTGAATCATGTCGTACGACAATTCTCTAACTTCCTTTCA
GATAATATCGATCTCGATATTCACGCGAAAAAAAATCTACATAATATTGCGACTGAAATGGTGAACTTAGTGGCTCAAGA
TAGCCATTGGCTGAATGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTATGGCCTTTATTTGTCACAACCAACC
GCACTAACCAAATGTTATTACAAAATATGTTTAGTAAGGCGATTGAGCGTGGAGATGTGTGTGATGAGCATGATCCTAAG
CATCTTGCGAACCTATTTCACGGTATCTGCTACTCGTTATTCATTCAAGCAAAACGTCTCGAAACGCCAGAAGAGCAAGA
AAACTTAACAGACAGCTACTTAAACATGTTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120DGB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81

99.502

0.806
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726