Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ODQ18_RS05355 Genome accession   NZ_CP107039
Coordinates   951997..953772 (+) Length   591 a.a.
NCBI ID   WP_015714092.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 946997..958772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS05305 (ODQ18_05305) yozC 947423..947626 (+) 204 WP_003231245.1 DUF6501 family protein -
  ODQ18_RS05310 (ODQ18_05310) yozO 947982..948326 (+) 345 WP_003220141.1 PH domain-containing protein -
  ODQ18_RS05315 (ODQ18_05315) - 948420..948653 (-) 234 WP_003231251.1 hypothetical protein -
  ODQ18_RS05320 (ODQ18_05320) - 948658..948921 (-) 264 WP_004399338.1 hypothetical protein -
  ODQ18_RS05325 (ODQ18_05325) yocM 948988..949464 (+) 477 WP_014477071.1 salt stress-responsive protein YocM -
  ODQ18_RS05330 (ODQ18_05330) - 949451..949678 (-) 228 WP_014480021.1 hypothetical protein -
  ODQ18_RS05335 (ODQ18_05335) - 949756..950088 (+) 333 WP_014480020.1 hypothetical protein -
  ODQ18_RS05340 (ODQ18_05340) stpP 950163..950654 (+) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  ODQ18_RS05345 (ODQ18_05345) azoJ 950806..951432 (+) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  ODQ18_RS05355 (ODQ18_05355) recQ 951997..953772 (+) 1776 WP_015714092.1 DNA helicase RecQ Machinery gene
  ODQ18_RS05360 (ODQ18_05360) walN 954020..954883 (+) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  ODQ18_RS05365 (ODQ18_05365) desR 955491..956090 (-) 600 WP_004399356.1 two-component system response regulator DesR -
  ODQ18_RS05370 (ODQ18_05370) desK 956109..957221 (-) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  ODQ18_RS05375 (ODQ18_05375) desE 957341..958399 (-) 1059 WP_004399588.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67386.80 Da        Isoelectric Point: 6.1778

>NTDB_id=640233 ODQ18_RS05355 WP_015714092.1 951997..953772(+) (recQ) [Bacillus subtilis strain 11060]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKESLKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=640233 ODQ18_RS05355 WP_015714092.1 951997..953772(+) (recQ) [Bacillus subtilis strain 11060]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAACTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACATGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACCGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTACTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAATC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RQC domain (RQC)

(403-508)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.492

100

0.995