Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   ODQ18_RS06110 Genome accession   NZ_CP107039
Coordinates   1125562..1126179 (+) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain 11060     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120562..1131179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS06075 (ODQ18_06075) ynzD 1120804..1120977 (+) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  ODQ18_RS06080 (ODQ18_06080) yneF 1121051..1121269 (-) 219 WP_003221221.1 YneF family protein -
  ODQ18_RS06085 (ODQ18_06085) sirA 1121355..1121801 (-) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  ODQ18_RS06090 (ODQ18_06090) recP/tkt 1121954..1123957 (-) 2004 WP_003231593.1 transketolase Machinery gene
  ODQ18_RS06095 (ODQ18_06095) ynzC 1124126..1124359 (-) 234 WP_003231595.1 DUF896 domain-containing protein -
  ODQ18_RS06100 (ODQ18_06100) dinL 1124423..1125076 (-) 654 WP_041850785.1 recombinase family protein -
  ODQ18_RS06105 (ODQ18_06105) yneA 1125095..1125412 (-) 318 WP_003231598.1 cell division suppressor protein YneA -
  ODQ18_RS06110 (ODQ18_06110) dinR/lexA 1125562..1126179 (+) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  ODQ18_RS06115 (ODQ18_06115) - 1126550..1126808 (-) 259 Protein_1193 hypothetical protein -
  ODQ18_RS06120 (ODQ18_06120) fosM 1126717..1127151 (-) 435 WP_032725818.1 FosM family fosfomycin resistance protein -
  ODQ18_RS06125 (ODQ18_06125) - 1127360..1127809 (+) 450 WP_015483284.1 YndM family protein -
  ODQ18_RS06130 (ODQ18_06130) pghL 1127836..1128594 (-) 759 WP_041850786.1 gamma-polyglutamate hydrolase PghL -
  ODQ18_RS06135 (ODQ18_06135) - 1128818..1129132 (-) 315 WP_166668700.1 hypothetical protein -
  ODQ18_RS06140 (ODQ18_06140) yndJ 1129222..1130862 (-) 1641 WP_038827863.1 YndJ family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=640237 ODQ18_RS06110 WP_003238209.1 1125562..1126179(+) (dinR/lexA) [Bacillus subtilis strain 11060]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=640237 ODQ18_RS06110 WP_003238209.1 1125562..1126179(+) (dinR/lexA) [Bacillus subtilis strain 11060]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACACACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1