Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FH104_RS08380 Genome accession   NZ_CP090014
Coordinates   1692986..1693381 (+) Length   131 a.a.
NCBI ID   WP_017175139.1    Uniprot ID   -
Organism   Staphylococcus hominis strain acrlk     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1687986..1698381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH104_RS08350 (FH104_08330) atpD 1688087..1689499 (+) 1413 WP_017175135.1 F0F1 ATP synthase subunit beta -
  FH104_RS08355 (FH104_08335) - 1689521..1689922 (+) 402 WP_002448708.1 F0F1 ATP synthase subunit epsilon -
  FH104_RS08360 (FH104_08340) - 1690236..1690466 (+) 231 WP_017175136.1 DUF1146 family protein -
  FH104_RS08365 (FH104_08345) murA 1690572..1691837 (+) 1266 WP_017175137.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FH104_RS08370 (FH104_08350) fabZ 1691865..1692302 (+) 438 WP_002448673.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FH104_RS08375 (FH104_08355) - 1692352..1692792 (-) 441 WP_017175138.1 YwpF-like family protein -
  FH104_RS08380 (FH104_08360) ssb 1692986..1693381 (+) 396 WP_017175139.1 single-stranded DNA-binding protein Machinery gene
  FH104_RS08385 (FH104_08365) - 1693785..1694531 (+) 747 WP_017175140.1 transglycosylase family protein -
  FH104_RS08390 (FH104_08370) tenA 1694923..1695612 (+) 690 WP_019835613.1 thiaminase II -
  FH104_RS08395 (FH104_08375) thiD 1695605..1696426 (+) 822 WP_017175142.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FH104_RS08400 (FH104_08380) thiM 1696419..1697207 (+) 789 WP_017175143.1 hydroxyethylthiazole kinase -
  FH104_RS08405 (FH104_08385) thiE 1697210..1697848 (+) 639 WP_048787784.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15148.29 Da        Isoelectric Point: 5.9389

>NTDB_id=640215 FH104_RS08380 WP_017175139.1 1692986..1693381(+) (ssb) [Staphylococcus hominis strain acrlk]
MLNKIVIVGRMTKDAKIYDNEEVKIATFSVATERNYKDENDEIACDYIFCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYPFDNLELMNIK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=640215 FH104_RS08380 WP_017175139.1 1692986..1693381(+) (ssb) [Staphylococcus hominis strain acrlk]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATGATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGATTATATATTTTGTAAAGCATTTG
GTAAGATGGCTAGCAACATTGAAAAATATACTTCTCAAGGATCTTTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTCACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATCCATTTGATAATCTCGAATTAATGAATATAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

100

0.756
  ssb Staphylococcus aureus MW2

74.809

100

0.748