Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FH100_RS07955 Genome accession   NZ_CP090011
Coordinates   1597251..1597646 (+) Length   131 a.a.
NCBI ID   WP_002488153.1    Uniprot ID   -
Organism   Staphylococcus hominis strain acrlg     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1592251..1602646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH100_RS07925 (FH100_07905) atpD 1592356..1593768 (+) 1413 WP_002448706.1 F0F1 ATP synthase subunit beta -
  FH100_RS07930 (FH100_07910) - 1593790..1594191 (+) 402 WP_002448708.1 F0F1 ATP synthase subunit epsilon -
  FH100_RS07935 (FH100_07915) - 1594500..1594730 (+) 231 WP_002448711.1 DUF1146 family protein -
  FH100_RS07940 (FH100_07920) murA 1594837..1596102 (+) 1266 WP_002488154.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FH100_RS07945 (FH100_07925) fabZ 1596130..1596567 (+) 438 WP_002448673.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FH100_RS07950 (FH100_07930) - 1596617..1597057 (-) 441 WP_002448687.1 YwpF-like family protein -
  FH100_RS07955 (FH100_07935) ssb 1597251..1597646 (+) 396 WP_002488153.1 single-stranded DNA-binding protein Machinery gene
  FH100_RS07960 (FH100_07940) - 1598051..1598842 (+) 792 WP_002488136.1 transglycosylase family protein -
  FH100_RS07965 (FH100_07945) tenA 1599233..1599922 (+) 690 WP_002488134.1 thiaminase II -
  FH100_RS07970 (FH100_07950) thiD 1599915..1600736 (+) 822 WP_002455065.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FH100_RS07975 (FH100_07955) thiM 1600729..1601517 (+) 789 WP_002448660.1 hydroxyethylthiazole kinase -
  FH100_RS07980 (FH100_07960) thiE 1601520..1602158 (+) 639 WP_002448695.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15181.38 Da        Isoelectric Point: 7.1326

>NTDB_id=640180 FH100_RS07955 WP_002488153.1 1597251..1597646(+) (ssb) [Staphylococcus hominis strain acrlg]
MLNKIVIVGRMTKDAKIYNNEEVKIATFSVATERNYKDENDEMACDYILCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDNSLNTDTYPFDHLELMNIK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=640180 FH100_RS07955 WP_002488153.1 1597251..1597646(+) (ssb) [Staphylococcus hominis strain acrlg]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATAATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATGGCGTGTGACTATATATTGTGTAAAGCATTTG
GTAAGATGGCCAGTAACATTGAAAAATATACTTCTCAAGGATCATTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTAACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAACTCACTAAATACAGACACTTATCCATTTGATCATCTCGAATTAATGAATATAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

72.519

100

0.725
  ssb Staphylococcus aureus MW2

71.756

100

0.718