Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   FH100_RS01625 Genome accession   NZ_CP090011
Coordinates   318187..318771 (+) Length   194 a.a.
NCBI ID   WP_002448199.1    Uniprot ID   A0A974QMC2
Organism   Staphylococcus hominis strain acrlg     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 313187..323771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH100_RS01595 (FH100_01590) - 314063..315430 (-) 1368 WP_002488323.1 isochorismate synthase -
  FH100_RS01600 (FH100_01595) - 315612..316550 (+) 939 WP_002488345.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  FH100_RS01605 (FH100_01600) - 316598..317149 (-) 552 WP_002488377.1 GNAT family N-acetyltransferase -
  FH100_RS01610 (FH100_01605) - 317293..317505 (+) 213 WP_002488370.1 TM2 domain-containing protein -
  FH100_RS01615 (FH100_01610) - 317595..317693 (+) 99 WP_017175792.1 SAR1012 family small protein -
  FH100_RS01620 (FH100_01615) - 317761..317979 (-) 219 WP_002488353.1 IDEAL domain-containing protein -
  FH100_RS01625 (FH100_01620) comK/comK1 318187..318771 (+) 585 WP_002448199.1 competence protein ComK Regulator
  FH100_RS01640 (FH100_01635) - 319174..320163 (-) 990 WP_002488358.1 lipoate--protein ligase -
  FH100_RS01645 (FH100_01640) - 320352..320528 (+) 177 WP_002448045.1 YkvS family protein -
  FH100_RS01650 (FH100_01645) - 320544..321146 (+) 603 WP_002448227.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  FH100_RS01655 (FH100_01650) - 321310..322668 (-) 1359 WP_002488327.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22940.27 Da        Isoelectric Point: 9.6668

>NTDB_id=640166 FH100_RS01625 WP_002448199.1 318187..318771(+) (comK/comK1) [Staphylococcus hominis strain acrlg]
MTQFNKPPNTIYVIRKGDMVIRPTFDNHQQPNGSEILKFDTSREISPFKTQKIIERSCRFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLKNRKSKIIFANQEALTLNVSFHSLWHQYSNSIFYYYMIDKQ
ARMKSNNPDMPIDYEKTSLNIFEALSHYSLLEDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=640166 FH100_RS01625 WP_002448199.1 318187..318771(+) (comK/comK1) [Staphylococcus hominis strain acrlg]
ATGACTCAGTTCAATAAACCACCTAATACGATTTATGTCATACGTAAAGGTGATATGGTGATTAGACCTACATTTGACAA
TCATCAACAACCGAACGGCTCAGAAATCCTCAAATTCGATACCTCACGAGAAATAAGCCCTTTTAAAACTCAAAAAATTA
TTGAACGATCATGTAGATTTTATGGCAATAACTACTTAAGCAAGAAAGCTGAAACTCAACGCATCGCTGGAATAACTAGT
AAACCTCCCATCCTTCTCACACCATTGTTTCCAACTTACTTTTTCCCAACACATTCAGACCGTTTAGAAGAAAATATATG
GATTAATATGCATTATATTTCTGATATTAAGCCATTAAAGAACAGAAAGAGTAAAATTATCTTTGCAAACCAAGAAGCAC
TAACATTAAATGTATCTTTTCATAGTTTATGGCATCAATATTCTAATTCTATTTTCTATTACTATATGATTGATAAACAA
GCAAGAATGAAGTCTAATAATCCAGATATGCCAATCGATTATGAAAAAACATCTTTAAATATTTTTGAGGCCCTTTCACA
CTATTCTTTATTAGAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

73.913

94.845

0.701
  comK/comK1 Staphylococcus aureus N315

73.913

94.845

0.701