Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LV507_RS05550 Genome accession   NZ_CP089999
Coordinates   1213443..1214831 (-) Length   462 a.a.
NCBI ID   WP_058360092.1    Uniprot ID   -
Organism   Xanthomonas translucens strain B8GF     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208443..1219831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV507_RS05525 (LV507_05525) pilA 1209573..1209989 (+) 417 WP_128809130.1 pilin Machinery gene
  LV507_RS05530 (LV507_05530) - 1210081..1210449 (-) 369 WP_153476696.1 hypothetical protein -
  LV507_RS05535 (LV507_05535) pilB 1210712..1212448 (+) 1737 WP_058360091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LV507_RS05540 (LV507_05540) - 1212458..1213075 (-) 618 WP_003477095.1 Fic family protein -
  LV507_RS05545 (LV507_05545) - 1213072..1213254 (-) 183 WP_003477093.1 YhfG family protein -
  LV507_RS05550 (LV507_05550) pilR 1213443..1214831 (-) 1389 WP_058360092.1 sigma-54 dependent transcriptional regulator Regulator
  LV507_RS05555 (LV507_05555) - 1214906..1216519 (-) 1614 WP_003477089.1 ATP-binding protein -
  LV507_RS05560 (LV507_05560) sucC 1216760..1217923 (+) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  LV507_RS05565 (LV507_05565) sucD 1217947..1218819 (+) 873 WP_233700740.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49859.26 Da        Isoelectric Point: 6.5828

>NTDB_id=639943 LV507_RS05550 WP_058360092.1 1213443..1214831(-) (pilR) [Xanthomonas translucens strain B8GF]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLATAILTRLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=639943 LV507_RS05550 WP_058360092.1 1213443..1214831(-) (pilR) [Xanthomonas translucens strain B8GF]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGTTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTTGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTCGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAATTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAGGTGCCCACCGATGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCACGGCGATCCTGACACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCCGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCA
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472