Detailed information NTG0063993

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P795_RS19390
• Genome accession: NC_023028
• Coordinates: 3398055..3398915 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii ZW85-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3393055..3403915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P795_RS15740 (P795_15620)	secG	3393660..3393989 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
P795_RS15745 (P795_15625)	tpiA	3394002..3394796 (-)	795	WP_000016940.1	triose-phosphate isomerase	-
P795_RS15750 (P795_15630)	pilB	3395087..3396799 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P795_RS15755 (P795_15635)	pilC	3396829..3398055 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
P795_RS19390 (P795_15640)	pilD	3398055..3398915 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
P795_RS15765 (P795_15645)	coaE	3398917..3399513 (+)	597	WP_023897382.1	dephospho-CoA kinase	-
P795_RS15770 (P795_15650)	-	3399510..3400424 (-)	915	WP_023897383.1	DMT family transporter	-
P795_RS15775 (P795_15655)	rlmB	3400460..3401209 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
P795_RS15780 (P795_15660)	-	3401311..3401637 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
P795_RS15785 (P795_15665)	-	3401714..3403024 (-)	1311	WP_023897385.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=63993 P795_RS19390 WP_001152273.1 3398055..3398915(+) (pilD) [Acinetobacter baumannii ZW85-1]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=63993 P795_RS19390 WP_001152273.1 3398055..3398915(+) (pilD) [Acinetobacter baumannii ZW85-1]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCTATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441