Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LVW35_RS26890 Genome accession   NZ_CP089985
Coordinates   5854711..5855118 (-) Length   135 a.a.
NCBI ID   WP_003176671.1    Uniprot ID   C3K3J6
Organism   Pseudomonas sp. HN11     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5849711..5860118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVW35_RS26875 (LVW35_26875) - 5851696..5853765 (-) 2070 WP_233892750.1 methyl-accepting chemotaxis protein -
  LVW35_RS26880 (LVW35_26880) - 5853762..5854286 (-) 525 WP_233892752.1 chemotaxis protein CheW -
  LVW35_RS26885 (LVW35_26885) pilH 5854299..5854664 (-) 366 WP_016976047.1 twitching motility response regulator PilH -
  LVW35_RS26890 (LVW35_26890) pilG 5854711..5855118 (-) 408 WP_003176671.1 twitching motility response regulator PilG Regulator
  LVW35_RS26895 (LVW35_26895) gshB 5855358..5856329 (+) 972 WP_233892753.1 glutathione synthase -
  LVW35_RS26900 (LVW35_26900) - 5856432..5857337 (+) 906 WP_233892754.1 energy transducer TonB -
  LVW35_RS26905 (LVW35_26905) - 5857405..5857974 (+) 570 WP_233892755.1 YqgE/AlgH family protein -
  LVW35_RS26910 (LVW35_26910) ruvX 5857974..5858411 (+) 438 WP_005792259.1 Holliday junction resolvase RuvX -
  LVW35_RS26915 (LVW35_26915) pyrR 5858485..5858991 (+) 507 WP_233892756.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LVW35_RS26920 (LVW35_26920) - 5859016..5860020 (+) 1005 WP_233892757.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14936.43 Da        Isoelectric Point: 7.3842

>NTDB_id=639714 LVW35_RS26890 WP_003176671.1 5854711..5855118(-) (pilG) [Pseudomonas sp. HN11]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLSAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=639714 LVW35_RS26890 WP_003176671.1 5854711..5855118(-) (pilG) [Pseudomonas sp. HN11]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAGACGATCCGCCGCACCGCTGAAACCTTGTT
GAAGAACGTGGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTTGATCATCATCCGCACA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGCGCGATCAAGGCCTACGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3K3J6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.4

92.593

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363