Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   LU301_RS11030 Genome accession   NZ_CP089978
Coordinates   2198793..2199968 (+) Length   391 a.a.
NCBI ID   WP_305270772.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2193793..2204968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS11005 (LU301_10995) - 2195049..2195741 (-) 693 WP_305270762.1 hypothetical protein -
  LU301_RS11010 (LU301_11000) hisG 2195803..2196480 (-) 678 WP_370692262.1 ATP phosphoribosyltransferase -
  LU301_RS11015 (LU301_11005) murA 2196481..2197740 (-) 1260 WP_305270766.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LU301_RS11020 (LU301_11010) ibaG 2197743..2197994 (-) 252 WP_305270768.1 BolA family iron metabolism protein IbaG -
  LU301_RS11025 (LU301_11015) def 2198148..2198666 (-) 519 WP_305270770.1 peptide deformylase -
  LU301_RS11030 (LU301_11020) tsaP 2198793..2199968 (+) 1176 WP_305270772.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LU301_RS11035 (LU301_11025) dprA 2200003..2201175 (+) 1173 WP_305270774.1 DNA-processing protein DprA Machinery gene
  LU301_RS11040 (LU301_11030) - 2201177..2201743 (+) 567 WP_305270777.1 Sua5/YciO/YrdC/YwlC family protein -
  LU301_RS11045 (LU301_11035) - 2201955..2202941 (+) 987 WP_370692263.1 mechanosensitive ion channel family protein -
  LU301_RS11055 (LU301_11045) - 2203562..2204686 (+) 1125 WP_305270781.1 tyrosine-type recombinase/integrase -
  LU301_RS11060 (LU301_11050) - 2204693..2204890 (-) 198 WP_305270784.1 hypothetical protein -

Sequence


Protein


Download         Length: 391 a.a.        Molecular weight: 42190.54 Da        Isoelectric Point: 10.0708

>NTDB_id=639639 LU301_RS11030 WP_305270772.1 2198793..2199968(+) (tsaP) [Moraxella sp. ZY210820]
MAQLFNGISSKKRSSFKQSVLAVALATGLALTGTQAVHASPNKAPPSIKAGAPQVYVVKKGDTLWGIAGKFLKSPWRWKE
IWAGNRHVKNPHRIYPGDRLLMCSYKGKPLIGKDQGDGCAGIIKRHTGSAKGPNNPQVRIEPLEASIATIPLAHIEHWLT
RSIIMSPDSLTHVPYILAPADKRVLAGKGQIVYARGNGLEIGQEYGVYRQTTPYTEVIPAEKKYKKPTVKVLAEELEQVA
AGVVTSIDASGTATIELTESYTAEVRSTDVVLPIYETNYPSMFFPTLKNQVTAGGKVIRVQGSISSGAKNSVITINRGTK
HGMDSGQVFAINEAGEVVQDPKTKQSVRLPDRGIGHVMIFKTFDNMSYGLILDATGPVHTGSSIVPSELID

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=639639 LU301_RS11030 WP_305270772.1 2198793..2199968(+) (tsaP) [Moraxella sp. ZY210820]
ATGGCTCAGCTTTTTAATGGCATTTCGTCAAAAAAACGTTCAAGTTTTAAGCAAAGTGTTTTAGCTGTTGCATTAGCAAC
AGGTTTAGCACTTACAGGTACACAAGCAGTTCATGCAAGCCCAAATAAGGCACCACCATCAATTAAAGCAGGTGCACCAC
AAGTATATGTGGTAAAAAAAGGAGATACTTTATGGGGTATTGCTGGAAAATTTTTAAAAAGCCCATGGCGTTGGAAAGAA
ATTTGGGCAGGTAACCGTCATGTTAAAAATCCACATCGTATCTATCCGGGCGATCGCTTATTAATGTGTAGTTATAAAGG
TAAGCCTTTAATTGGTAAAGACCAAGGTGATGGCTGTGCAGGAATCATCAAACGCCATACAGGTAGTGCCAAAGGTCCAA
ATAACCCTCAAGTCCGTATAGAACCTTTAGAAGCCTCTATTGCAACTATTCCTTTAGCACATATTGAACATTGGCTTACA
CGCTCAATTATCATGTCACCAGATAGCTTGACTCATGTTCCATATATACTTGCACCAGCAGATAAACGCGTACTTGCAGG
TAAAGGGCAAATTGTTTATGCTCGCGGCAATGGTTTAGAAATTGGTCAAGAATATGGTGTATATCGCCAAACGACCCCTT
ATACTGAAGTCATTCCAGCAGAGAAAAAATACAAAAAGCCAACCGTTAAAGTACTGGCTGAAGAGTTAGAACAAGTGGCA
GCAGGTGTAGTAACTTCAATTGATGCATCTGGTACTGCAACCATTGAATTAACTGAAAGTTACACGGCTGAAGTACGCAG
TACAGATGTAGTGTTACCAATTTACGAAACAAATTATCCATCAATGTTCTTCCCTACCCTTAAAAATCAAGTAACAGCTG
GTGGTAAAGTCATTCGTGTACAAGGTTCTATTTCTTCTGGTGCAAAAAATAGCGTCATAACCATCAATCGTGGTACAAAA
CACGGTATGGATTCTGGACAAGTTTTTGCGATTAATGAAGCAGGTGAAGTGGTTCAAGATCCAAAGACTAAACAATCTGT
ACGCTTACCTGATCGTGGCATTGGTCATGTGATGATTTTTAAAACCTTTGATAATATGAGTTACGGTTTAATTTTGGATG
CAACTGGACCTGTACATACGGGTAGTTCAATTGTTCCATCTGAATTAATCGACTAA

Domains


Predicted by InterproScan.

(56-100)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

52.296

100

0.524