Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | LRP86_RS06450 | Genome accession | NZ_CP089973 |
| Coordinates | 1385863..1387209 (+) | Length | 448 a.a. |
| NCBI ID | WP_003205703.1 | Uniprot ID | F2KLF1 |
| Organism | Pseudomonas brassicacearum strain WCS365 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1380863..1392209
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRP86_RS06425 (LRP86_01282) | pgeF | 1381077..1381802 (-) | 726 | WP_003205694.1 | peptidoglycan editing factor PgeF | - |
| LRP86_RS06430 (LRP86_01283) | rluD | 1381799..1382761 (-) | 963 | WP_003205696.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| LRP86_RS06435 (LRP86_01284) | - | 1382912..1383928 (+) | 1017 | WP_003205698.1 | outer membrane protein assembly factor BamD | - |
| LRP86_RS06440 (LRP86_01285) | - | 1384054..1384287 (+) | 234 | WP_013694237.1 | PP0621 family protein | - |
| LRP86_RS06445 (LRP86_01286) | pilS | 1384277..1385866 (+) | 1590 | WP_003205701.1 | two-component system sensor histidine kinase NtrB | Regulator |
| LRP86_RS06450 (LRP86_01287) | pilR | 1385863..1387209 (+) | 1347 | WP_003205703.1 | sigma-54-dependent transcriptional regulator | Regulator |
| LRP86_RS06455 (LRP86_01288) | - | 1387301..1387666 (-) | 366 | WP_100264368.1 | DUF6124 family protein | - |
| LRP86_RS06460 | - | 1387963..1388151 (+) | 189 | WP_155252615.1 | nucleoid-structuring protein H-NS | - |
| LRP86_RS06465 (LRP86_01291) | thiO | 1388883..1389983 (-) | 1101 | WP_003205709.1 | glycine oxidase ThiO | - |
| LRP86_RS06470 (LRP86_01292) | - | 1390039..1390440 (-) | 402 | WP_003205711.1 | type IV pilin protein | - |
Sequence
Protein
Download Length: 448 a.a. Molecular weight: 50084.49 Da Isoelectric Point: 6.2020
>NTDB_id=639538 LRP86_RS06450 WP_003205703.1 1385863..1387209(+) (pilR) [Pseudomonas brassicacearum strain WCS365]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIGKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIGKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1347 bp
>NTDB_id=639538 LRP86_RS06450 WP_003205703.1 1385863..1387209(+) (pilR) [Pseudomonas brassicacearum strain WCS365]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGAGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACGACCC
TCGAGCGCAGCCTGCTGGGCAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGGGAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCTCGTGCCAA
CCAGCGCTTCGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACTTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGACGGCGAAGTGGCTGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCT
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGTCAGATTGCATCCCCAAGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGAGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGAGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACGACCC
TCGAGCGCAGCCTGCTGGGCAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGGGAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCTCGTGCCAA
CCAGCGCTTCGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACTTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGACGGCGAAGTGGCTGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCT
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGTCAGATTGCATCCCCAAGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGAGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.054 |
99.107 |
0.783 |
| pilR | Acinetobacter baumannii strain A118 |
50.327 |
100 |
0.516 |