Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   LXA49_RS09120 Genome accession   NZ_CP089949
Coordinates   1784253..1785179 (-) Length   308 a.a.
NCBI ID   WP_001291294.1    Uniprot ID   A0A0B7KZ00
Organism   Streptococcus pneumoniae strain SN75752     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779253..1790179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA49_RS09100 (LXA49_09090) treR 1780377..1781087 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  LXA49_RS09105 (LXA49_09095) - 1781120..1781923 (-) 804 WP_000157672.1 ATP-binding cassette domain-containing protein -
  LXA49_RS09110 (LXA49_09100) - 1781936..1782813 (-) 878 Protein_1828 ABC transporter permease -
  LXA49_RS09115 (LXA49_09105) - 1782825..1783762 (-) 938 Protein_1829 ABC transporter substrate-binding protein -
  LXA49_RS09120 (LXA49_09110) amiF 1784253..1785179 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  LXA49_RS09125 (LXA49_09115) amiE 1785190..1786257 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  LXA49_RS09130 (LXA49_09120) amiD 1786266..1787192 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  LXA49_RS09135 (LXA49_09125) amiC 1787192..1788688 (-) 1497 WP_000759905.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34826.88 Da        Isoelectric Point: 6.6224

>NTDB_id=639427 LXA49_RS09120 WP_001291294.1 1784253..1785179(-) (amiF) [Streptococcus pneumoniae strain SN75752]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQTELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=639427 LXA49_RS09120 WP_001291294.1 1784253..1785179(-) (amiF) [Streptococcus pneumoniae strain SN75752]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCGTCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAACCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7KZ00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844