Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LXA49_RS09100 Genome accession   NZ_CP089949
Coordinates   1780377..1781087 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain SN75752     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775377..1786087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA49_RS09085 (LXA49_09075) - 1776029..1776280 (-) 252 WP_000364991.1 YneF family protein -
  LXA49_RS09090 (LXA49_09080) treC 1776422..1778047 (-) 1626 WP_000171211.1 alpha,alpha-phosphotrehalase -
  LXA49_RS09095 (LXA49_09085) treP 1778225..1780192 (-) 1968 WP_000514304.1 PTS system trehalose-specific EIIBC component -
  LXA49_RS09100 (LXA49_09090) treR 1780377..1781087 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  LXA49_RS09105 (LXA49_09095) - 1781120..1781923 (-) 804 WP_000157672.1 ATP-binding cassette domain-containing protein -
  LXA49_RS09110 (LXA49_09100) - 1781936..1782813 (-) 878 Protein_1828 ABC transporter permease -
  LXA49_RS09115 (LXA49_09105) - 1782825..1783762 (-) 938 Protein_1829 ABC transporter substrate-binding protein -
  LXA49_RS09120 (LXA49_09110) amiF 1784253..1785179 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=639426 LXA49_RS09100 WP_000760673.1 1780377..1781087(+) (treR) [Streptococcus pneumoniae strain SN75752]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=639426 LXA49_RS09100 WP_000760673.1 1780377..1781087(+) (treR) [Streptococcus pneumoniae strain SN75752]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593