Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   LXA46_RS07335 Genome accession   NZ_CP089948
Coordinates   1476247..1477479 (-) Length   410 a.a.
NCBI ID   WP_000106346.1    Uniprot ID   A0A064C077
Organism   Streptococcus pneumoniae TIGR4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471247..1482479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA46_RS07305 (LXA46_07295) - 1471437..1472402 (+) 966 WP_000081011.1 NAD(P)/FAD-dependent oxidoreductase -
  LXA46_RS07310 (LXA46_07300) whiA 1472436..1473347 (-) 912 WP_000011310.1 DNA-binding protein WhiA -
  LXA46_RS07315 (LXA46_07305) - 1473344..1474321 (-) 978 WP_001231105.1 YvcK family protein -
  LXA46_RS07320 (LXA46_07310) rapZ 1474318..1475208 (-) 891 WP_000163033.1 RNase adapter RapZ -
  LXA46_RS07325 (LXA46_07315) - 1475260..1475640 (-) 381 WP_001140412.1 RidA family protein -
  LXA46_RS07330 (LXA46_07320) yihA 1475651..1476238 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LXA46_RS07335 (LXA46_07325) clpX 1476247..1477479 (-) 1233 WP_000106346.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  LXA46_RS07340 (LXA46_07330) - 1477681..1478187 (-) 507 WP_000162484.1 dihydrofolate reductase -
  LXA46_RS07345 (LXA46_07335) - 1478317..1478835 (-) 519 WP_000229874.1 Dps family protein -
  LXA46_RS07350 (LXA46_07340) lytC 1479331..1480835 (-) 1505 Protein_1480 choline binding-anchored murein hydrolase LytC -
  LXA46_RS07355 (LXA46_07345) tpiA 1480873..1481631 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  LXA46_RS07360 (LXA46_07350) - 1481729..1482406 (-) 678 WP_000221613.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 4.4550

>NTDB_id=639337 LXA46_RS07335 WP_000106346.1 1476247..1477479(-) (clpX) [Streptococcus pneumoniae TIGR4]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=639337 LXA46_RS07335 WP_000106346.1 1476247..1477479(-) (clpX) [Streptococcus pneumoniae TIGR4]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTCATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTAGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C077

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561