Detailed information NTG0063933

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U769_RS24185
• Genome accession: NC_023019
• Coordinates: 5238761..5239633 (+)
• Length: 290 a.a.
• NCBI ID: WP_023092875.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa MTB-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5233761..5244633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U769_RS24170 (U769_24325)	-	5235144..5235608 (-)	465	WP_023092872.1	pilin	-
U769_RS24175 (U769_24330)	pilB	5235839..5237539 (+)	1701	WP_023092873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U769_RS24180 (U769_24335)	pilC	5237543..5238760 (+)	1218	WP_023092874.1	type II secretion system F family protein	Machinery gene
U769_RS24185 (U769_24340)	pilD	5238761..5239633 (+)	873	WP_023092875.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
U769_RS24190 (U769_24345)	coaE	5239630..5240241 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
U769_RS24195 (U769_24350)	yacG	5240238..5240438 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
U769_RS24200 (U769_24355)	-	5240475..5240684 (-)	210	WP_003094660.1	hypothetical protein	-
U769_RS24205 (U769_24360)	-	5240790..5241479 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
U769_RS24210 (U769_24365)	-	5241476..5241946 (-)	471	WP_003094664.1	hypothetical protein	-
U769_RS24215 (U769_24370)	-	5241943..5242368 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
U769_RS24220 (U769_24375)	-	5242501..5243130 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
U769_RS24225 (U769_24380)	-	5243127..5243576 (+)	450	WP_003141357.1	MOSC domain-containing protein	-
U769_RS24230 (U769_24385)	-	5243602..5243772 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31861.91 Da
• Isoelectric Point: 7.7068

>NTDB_id=63933 U769_RS24185 WP_023092875.1 5238761..5239633(+) (pilD) [Pseudomonas aeruginosa MTB-1]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVMV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=63933 U769_RS24185 WP_023092875.1 5238761..5239633(+) (pilD) [Pseudomonas aeruginosa MTB-1]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTTACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGATGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476