Detailed information NTG0639188

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LVE68_RS13705
• Genome accession: NZ_CP089928
• Coordinates: 3155959..3157398 (-)
• Length: 479 a.a.
• NCBI ID: WP_232940945.1
• Uniprot ID: -
• Organism: Microbulbifer sp. YPW16
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3150959..3162398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVE68_RS13690 (LVE68_13690)	-	3151252..3155466 (+)	4215	WP_232940944.1	pilus assembly protein	-
LVE68_RS13700 (LVE68_13700)	-	3155479..3155904 (+)	426	WP_305080383.1	type IV pilin protein	-
LVE68_RS13705 (LVE68_13705)	pilR	3155959..3157398 (-)	1440	WP_232940945.1	sigma-54 dependent transcriptional regulator	Regulator
LVE68_RS13710 (LVE68_13710)	-	3157489..3159084 (-)	1596	WP_232940946.1	PAS domain-containing sensor histidine kinase	-
LVE68_RS13715 (LVE68_13715)	-	3159188..3160816 (+)	1629	WP_232940947.1	NAD+ synthase	-
LVE68_RS13720 (LVE68_13720)	-	3160893..3161825 (-)	933	WP_232940948.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 53152.59 Da
• Isoelectric Point: 6.4172

>NTDB_id=639188 LVE68_RS13705 WP_232940945.1 3155959..3157398(-) (pilR) [Microbulbifer sp. YPW16]
MQPLALVVDDEPDICELLTMTLGRMDVNSHTANSLGEAHQLLGQHRYDFCLTDMRLPDGDGLQLVRHLQEHTTQHGDLPI
AVITAHGSMDTAIDALKLGAFDFVSKPVNLERLRALVQLALRLDRREIVANDSTHSRLLGQAPVMQQLRQRIAKVARSDA
PVYISGESGSGKELAARSIHEQGARADKPFVPINCGAIPAELMESEFFGHRKGSFTGAHRDKAGLFQSAAGGTLFLDEVA
DLPLEMQVKLLRAIQEKSVRPVGSSEEVPIDVRILSATHRDLSAEVAAGRFRSDLFYRINVIDIHVPPLRERAGDIPLLA
QTIMRRIASEAGTDMPRLSEGAFRALQEYPFPGNVRQLENILERALTLCEQQVIQAEDLLLEPCQRAAPHDSPFDHKGAE
INALPARKKPLDGVLDAGHEPGFDLARHQSLDRYLQEIERHVIESTLAETRWNRTSAAQKLGISFRSLRYRLKKLGLED

Nucleotide

• Length: 1440 bp

>NTDB_id=639188 LVE68_RS13705 WP_232940945.1 3155959..3157398(-) (pilR) [Microbulbifer sp. YPW16]
ATGCAGCCTCTTGCACTGGTCGTCGATGACGAGCCGGACATCTGCGAGCTCCTGACCATGACCCTGGGGCGGATGGACGT
CAACAGCCATACCGCCAACAGCCTGGGGGAAGCCCACCAGCTCCTCGGTCAGCACCGCTACGATTTTTGTCTTACTGACA
TGCGCCTGCCAGACGGGGACGGACTGCAACTGGTGCGGCATTTACAGGAACATACAACGCAGCACGGAGACCTCCCGATC
GCGGTAATTACAGCCCACGGCAGTATGGATACCGCCATCGACGCGCTGAAACTGGGCGCCTTCGACTTTGTCAGCAAGCC
GGTCAATCTGGAGCGGTTACGCGCCCTGGTGCAACTGGCCCTGCGACTCGACCGCCGTGAAATTGTCGCCAATGACAGTA
CGCACAGCCGGCTGCTCGGGCAGGCACCGGTAATGCAGCAGCTGCGCCAGCGGATCGCCAAGGTTGCACGAAGTGATGCA
CCTGTTTATATCAGCGGAGAATCTGGCTCCGGCAAGGAGCTGGCCGCCCGCTCCATACACGAACAGGGAGCGCGAGCTGA
CAAGCCCTTTGTCCCCATTAATTGTGGCGCCATTCCCGCCGAGCTGATGGAGAGTGAGTTTTTCGGCCATCGCAAGGGGA
GCTTTACCGGGGCGCATAGGGACAAGGCGGGTCTTTTCCAGAGTGCGGCAGGCGGCACCCTGTTCCTCGACGAAGTTGCC
GACCTGCCCCTTGAAATGCAGGTGAAGCTACTGCGGGCAATTCAGGAGAAGAGCGTGCGACCGGTCGGGTCCAGTGAAGA
GGTCCCCATTGATGTCCGCATTCTCAGTGCCACGCACAGGGATCTCTCCGCAGAGGTGGCTGCCGGGCGTTTTCGCAGTG
ACCTTTTCTACCGAATAAATGTAATCGATATCCACGTACCCCCGCTGCGGGAACGCGCCGGGGATATTCCACTACTGGCG
CAAACGATCATGCGCCGTATCGCCAGTGAAGCCGGTACCGATATGCCCAGACTGTCGGAAGGCGCTTTTCGGGCATTACA
GGAGTACCCTTTTCCCGGCAACGTGCGCCAGCTGGAAAATATACTGGAACGGGCCCTTACTCTCTGTGAACAGCAGGTTA
TACAGGCCGAGGACCTGCTACTGGAACCCTGCCAGCGTGCGGCGCCACATGATTCCCCCTTCGACCATAAGGGTGCAGAA
ATAAATGCATTACCAGCTCGGAAAAAGCCTCTGGATGGAGTGCTTGATGCTGGCCACGAGCCAGGCTTCGACCTGGCACG
CCATCAGTCCCTGGACCGGTATCTGCAGGAAATAGAGCGACATGTAATCGAATCGACCCTGGCTGAAACACGCTGGAACA
GGACGTCCGCAGCCCAGAAACTGGGCATTAGCTTCCGATCCCTGCGCTACCGCCTGAAGAAGCTGGGGCTGGAGGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-117)

• Bacterial regulatory protein, Fis family (HTH_8) (435-475)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.65	98.956	0.58
pilR	Acinetobacter baumannii strain A118	50	100	0.503