Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SLV14_RS18470 Genome accession   NZ_CP106840
Coordinates   4290295..4290909 (+) Length   204 a.a.
NCBI ID   WP_259670398.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4285295..4295909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLV14_RS18440 (SLV14_003697) - 4286245..4286694 (+) 450 WP_263270221.1 DoxX family protein -
  SLV14_RS18445 (SLV14_003698) - 4286766..4286897 (+) 132 WP_259670397.1 hypothetical protein -
  SLV14_RS18450 (SLV14_003699) - 4286924..4287139 (-) 216 WP_208682029.1 hypothetical protein -
  SLV14_RS18455 (SLV14_003700) - 4287211..4288011 (-) 801 WP_263270222.1 ABC transporter permease -
  SLV14_RS18460 (SLV14_003701) - 4288008..4288949 (-) 942 WP_208682033.1 ABC transporter ATP-binding protein -
  SLV14_RS18465 (SLV14_003702) - 4289027..4290292 (+) 1266 WP_263270223.1 sensor histidine kinase -
  SLV14_RS18470 (SLV14_003703) vraR 4290295..4290909 (+) 615 WP_259670398.1 response regulator Regulator
  SLV14_RS18475 (SLV14_003704) - 4290971..4291819 (-) 849 WP_263270224.1 class I SAM-dependent methyltransferase -
  SLV14_RS18480 (SLV14_003705) - 4291938..4292075 (-) 138 WP_167540533.1 hypothetical protein -
  SLV14_RS18485 (SLV14_003706) - 4292538..4293245 (+) 708 WP_208682039.1 hypothetical protein -
  SLV14_RS18490 (SLV14_003707) - 4293242..4294291 (+) 1050 WP_208682041.1 TOMM precursor leader peptide-binding protein -
  SLV14_RS18495 (SLV14_003708) - 4294288..4295688 (+) 1401 WP_263270225.1 YcaO-like family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21014.21 Da        Isoelectric Point: 6.4765

>NTDB_id=638490 SLV14_RS18470 WP_259670398.1 4290295..4290909(+) (vraR) [Streptomyces sp. Je 1-4]
MADDHTVVRQGIVALLSLESDIEIVGEAQDGTSVVSATTALRPDVVLMDLRMPGGGGIAATRKISSLVPDCRVLVLTTYD
NDASIVGAIEAGAIGYLLKSTSTPELVAGVRSAAVGRSVITPAVTLQMARRRSGTATSSPTPREIEILALVAQGRTNARI
AEQLGIGEATVKTHLLSAFRKLGVSDRTEAVMAALSAGLISLPG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=638490 SLV14_RS18470 WP_259670398.1 4290295..4290909(+) (vraR) [Streptomyces sp. Je 1-4]
GTGGCGGACGACCACACCGTGGTACGCCAGGGCATCGTGGCGCTGCTGTCCCTGGAGTCCGACATCGAGATCGTGGGCGA
GGCCCAGGACGGTACGTCCGTGGTCAGCGCGACGACAGCGTTGCGTCCCGATGTCGTGCTGATGGATCTGCGCATGCCCG
GCGGTGGGGGCATCGCCGCCACCAGAAAGATCAGCTCGCTGGTGCCGGACTGCCGCGTCCTGGTGCTGACGACCTATGAC
AACGACGCATCGATCGTCGGTGCCATCGAGGCGGGCGCCATCGGCTATCTGCTGAAGTCGACCTCCACACCCGAACTCGT
GGCAGGGGTACGCTCCGCCGCCGTGGGACGCTCCGTGATCACCCCCGCGGTCACCCTGCAGATGGCACGGCGGCGCAGCG
GTACGGCCACCTCCTCCCCGACCCCGCGCGAAATCGAGATCCTCGCCCTCGTCGCCCAGGGGCGGACCAACGCCCGCATC
GCCGAACAACTGGGCATCGGCGAAGCCACCGTCAAGACCCACCTGCTCAGCGCCTTCCGAAAACTCGGCGTATCGGACCG
CACGGAAGCCGTCATGGCGGCGCTGTCGGCGGGGCTGATCAGCTTGCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(2-109)

Bacterial regulatory proteins, luxR family (GerE)

(141-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.394

99.51

0.402
  degU Bacillus subtilis subsp. subtilis str. 168

33.79

100

0.363