Detailed information NTG0063838

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: U064_RS00190
• Genome accession: NC_022911
• Coordinates: 36327..37382 (+)
• Length: 351 a.a.
• NCBI ID: WP_023591493.1
• Uniprot ID: -
• Organism: Helicobacter pylori BM012S
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31327..42382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U064_RS00160 (U064_0032)	-	31770..32183 (+)	414	WP_001023008.1	universal stress protein	-
U064_RS00165 (U064_0033)	-	32185..32460 (+)	276	WP_000784906.1	ATP-dependent Clp protease adaptor ClpS	-
U064_RS00170 (U064_0034)	-	32460..34685 (+)	2226	WP_023591490.1	AAA family ATPase	-
U064_RS00175 (U064_0035)	panD	34675..35028 (+)	354	WP_023591491.1	aspartate 1-decarboxylase	-
U064_RS00180 (U064_0036)	-	35031..35324 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
U064_RS00185 (U064_0037)	-	35324..36319 (+)	996	WP_041200974.1	PDZ domain-containing protein	-
U064_RS00190 (U064_0038)	comB6	36327..37382 (+)	1056	WP_023591493.1	P-type conjugative transfer protein TrbL	Machinery gene
U064_RS00195 (U064_0039)	comB7	37398..37511 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
U064_RS00200 (U064_0040)	comB8	37508..38251 (+)	744	WP_023591494.1	type IV secretion system protein	Machinery gene
U064_RS00205 (U064_0041)	comB9	38251..39237 (+)	987	WP_041200975.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
U064_RS00210 (U064_0042)	comB10	39230..40366 (+)	1137	WP_023591496.1	DNA type IV secretion system protein ComB10	Machinery gene
U064_RS00215 (U064_0043)	-	40437..41849 (+)	1413	WP_023591497.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39761.78 Da
• Isoelectric Point: 8.8155

>NTDB_id=63838 U064_RS00190 WP_023591493.1 36327..37382(+) (comB6) [Helicobacter pylori BM012S]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASTLTEALWFVGFFALFNY
ALKNPLHFYELFQNAIFIAPNMIVQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCIFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=63838 U064_RS00190 WP_023591493.1 36327..37382(+) (comB6) [Helicobacter pylori BM012S]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTAGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGAAGCT
TGAAAGAACAGAATTTATTCAGCGCCAGCACGCTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTTTTCAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCGTGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATGGACGCTAGCATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCATTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAATCTCAGCCAAAACGCTCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954