Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   LUM42_RS21055 Genome accession   NZ_CP089605
Coordinates   852817..854868 (-) Length   683 a.a.
NCBI ID   WP_158141878.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFN3     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 847817..859868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS21040 (LUM42_21040) clcA 848740..850137 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  LUM42_RS21045 (LUM42_21045) - 850298..851257 (+) 960 WP_004728184.1 TDT family transporter -
  LUM42_RS21050 (LUM42_21050) cqsA 851475..852656 (+) 1182 WP_014257352.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LUM42_RS21055 (LUM42_21055) cqsS 852817..854868 (-) 2052 WP_158141878.1 response regulator Regulator
  LUM42_RS21060 (LUM42_21060) - 855008..858049 (-) 3042 WP_232658915.1 AAA family ATPase -
  LUM42_RS21065 (LUM42_21065) - 858053..859195 (-) 1143 WP_232658917.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78714.50 Da        Isoelectric Point: 6.0597

>NTDB_id=638377 LUM42_RS21055 WP_158141878.1 852817..854868(-) (cqsS) [Vibrio furnissii strain VFN3]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRGFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIIVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLEIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=638377 LUM42_RS21055 WP_158141878.1 852817..854868(-) (cqsS) [Vibrio furnissii strain VFN3]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTTCCGCAGCCCTATGAATCGCTGCTGCTGCGCGGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTATATGATGTTGATGAACGATTGGTCCACGGTGTGGGCGATGTCATTCATGGCGTC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCGGCGGCGTATG
GCGCCGTGTATTGGTTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTCCTGTTCACATAC
GTGTTCGGGAATCTGTTCTATTTCAGAAACCAAAGCTCGCATGAGTCGAAGGTGTCGATTGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGTAACCCGCTTAGTGCGTTGAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGACGGACAGGACTTGACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGACCTGTTACTCACGTCTATCGATGAAAACCGCGTCTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCACGCCCTGCATTCCTTCTCGTATAAACGCGCGTTGGATCGTCAGGCCGTCA
CACTCAACGCCATCAACGATTTTGACTATTTCGGCAGTGAAACCTTGCTGAAGTTTGCCCTCTACAATTTATTGAAAAAT
GCCTTTTATTATCAGAACAGTGAACATTTTCATATCGAAGTGACGCTCATCACTCGGGGCCAAGAAAACCTCATCATCGT
ACGAGATAACGGCGTGGGCATCGCCCCAGACCGCTTGGATGACATCTTTAAGGACTTCTATACCTTTGGTAAAAATGGCA
GTTACGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGTGGCAACATCCGTTGCGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGCGTCTCACACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTGAGCGAGAAAGCGTTCTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACACGTGAAGAGTACGAGTTTGAATACGACATTATTCTGCTGGATTTAGAG
CAGATCGGCGATCAGTGGCAGTCATTGGTCGAGCTAGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATTAATATTGAGCGCCATTTGCGGGTCGTACCTTTAGAAATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTGCTGTTTGAGGTGGATGACGTTGCACCGGATCACAATGTTGTGCCGATCAAACAA
CCAAAATATGAACGCCGTATTCTGGTGGTGGATGACAACCAATCACTGCGCACATTCACGGCGTTGCTGCTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAGGCGTTGGATGCAATGGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGCGTGATTCGGGATTCCAACAAGCCGTACTGCCACATT
CCGATTGTTGGCCACACTGGGGATAATAGCCCGCTGACGATTGAGAAAATTCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.064

100

0.592