Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LUM42_RS13360 Genome accession   NZ_CP089603
Coordinates   2871026..2871643 (+) Length   205 a.a.
NCBI ID   WP_014204466.1    Uniprot ID   A0A0Q2MAY4
Organism   Vibrio furnissii strain VFN3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866026..2876643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS13335 (LUM42_13335) panC 2866470..2867351 (+) 882 WP_232658176.1 pantoate--beta-alanine ligase -
  LUM42_RS13340 (LUM42_13340) - 2867425..2868195 (-) 771 WP_004729049.1 ABC transporter permease -
  LUM42_RS13345 (LUM42_13345) - 2868201..2869118 (-) 918 WP_143680351.1 ABC transporter ATP-binding protein -
  LUM42_RS13350 (LUM42_13350) can 2869462..2870130 (+) 669 WP_004729053.1 carbonate dehydratase -
  LUM42_RS13355 (LUM42_13355) hpt 2870178..2870705 (-) 528 WP_004729056.1 hypoxanthine phosphoribosyltransferase -
  LUM42_RS13360 (LUM42_13360) opaR 2871026..2871643 (+) 618 WP_014204466.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  LUM42_RS13365 (LUM42_13365) lpdA 2871762..2873189 (-) 1428 WP_004729062.1 dihydrolipoyl dehydrogenase -
  LUM42_RS13370 (LUM42_13370) aceF 2873462..2875354 (-) 1893 WP_232658177.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23851.20 Da        Isoelectric Point: 6.2312

>NTDB_id=638359 LUM42_RS13360 WP_014204466.1 2871026..2871643(+) (opaR) [Vibrio furnissii strain VFN3]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDMHAKDNIANITREMVRLANDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFSKAIERGEVCEQHDA
DDLATLFHGVCYSLFVQANRVRDEGYMQKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=638359 LUM42_RS13360 WP_014204466.1 2871026..2871643(+) (opaR) [Vibrio furnissii strain VFN3]
ATGGACGCATCGATAGAGAAACGCCCTAGAACGCGGCTATCTCCCCAAAAACGTAAACTTCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAATCGTGGGATTGGTCGTGGCGGTCACGCCGACATCGCAGAAATTGCTCAAGTTTCTGTCGCGACCG
TATTCAACTACTTCCCAACGCGCGAAGATTTGGTCGACGACGTGCTCACTTACGTGGTTCGTCAGTTCTCCAACTTCCTG
ACCGACAACATCGATCTGGACATGCACGCAAAAGACAACATTGCGAACATCACCCGCGAAATGGTTCGTCTGGCCAATGA
CGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGCGCATCCACCCGTGATGAAGTGTGGCCCCTGTTTGTGTCGAGCA
ACCGCACCAACCAACTGCTGCTGAAAAACATGTTCTCAAAAGCGATTGAACGGGGTGAAGTATGCGAGCAGCACGATGCA
GATGATCTGGCGACGCTGTTCCATGGCGTGTGCTACTCCCTGTTCGTGCAAGCAAACCGTGTACGCGATGAAGGCTACAT
GCAGAAGCTGGTGAAGAGCTACCTCGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2MAY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.198

98.537

0.79
  hapR Vibrio cholerae C6706

77.723

98.537

0.766
  hapR Vibrio cholerae strain A1552

77.723

98.537

0.766