Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NDQ80_RS02350 Genome accession   NZ_CP106821
Coordinates   453549..454160 (+) Length   203 a.a.
NCBI ID   WP_033911077.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10529     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448549..459160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ80_RS02325 (NDQ80_02330) - 449019..449600 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ80_RS02330 (NDQ80_02335) dnaB 449764..451170 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ80_RS02335 (NDQ80_02340) pilH 451324..451989 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ80_RS02340 (NDQ80_02345) pilV 452021..452632 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  NDQ80_RS02345 (NDQ80_02350) pilJ 452629..453570 (+) 942 WP_047920195.1 PilW family protein Machinery gene
  NDQ80_RS02350 (NDQ80_02355) pilK 453549..454160 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ80_RS02355 (NDQ80_02360) pilL 454162..454635 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ80_RS02360 (NDQ80_02365) - 454705..455013 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ80_RS02365 (NDQ80_02370) - 455010..455720 (-) 711 Protein_464 AzlC family ABC transporter permease -
  NDQ80_RS02370 (NDQ80_02375) dut 455886..456338 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ80_RS02375 (NDQ80_02380) dapC 456414..457601 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  NDQ80_RS02380 (NDQ80_02385) yaaA 457757..458536 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22068.97 Da        Isoelectric Point: 7.5813

>NTDB_id=638255 NDQ80_RS02350 WP_033911077.1 453549..454160(+) (pilK) [Neisseria gonorrhoeae strain 10529]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=638255 NDQ80_RS02350 WP_033911077.1 453549..454160(+) (pilK) [Neisseria gonorrhoeae strain 10529]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCTTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956