Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   NDQ80_RS02340 Genome accession   NZ_CP106821
Coordinates   452021..452632 (+) Length   203 a.a.
NCBI ID   WP_003699626.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10529     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 447021..457632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ80_RS02315 (NDQ80_02320) - 447619..447951 (+) 333 WP_003687908.1 hypothetical protein -
  NDQ80_RS02320 (NDQ80_02325) - 448278..448787 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ80_RS02325 (NDQ80_02330) - 449019..449600 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ80_RS02330 (NDQ80_02335) dnaB 449764..451170 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ80_RS02335 (NDQ80_02340) pilH 451324..451989 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ80_RS02340 (NDQ80_02345) pilV 452021..452632 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  NDQ80_RS02345 (NDQ80_02350) pilJ 452629..453570 (+) 942 WP_047920195.1 PilW family protein Machinery gene
  NDQ80_RS02350 (NDQ80_02355) pilK 453549..454160 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ80_RS02355 (NDQ80_02360) pilL 454162..454635 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ80_RS02360 (NDQ80_02365) - 454705..455013 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ80_RS02365 (NDQ80_02370) - 455010..455720 (-) 711 Protein_464 AzlC family ABC transporter permease -
  NDQ80_RS02370 (NDQ80_02375) dut 455886..456338 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ80_RS02375 (NDQ80_02380) dapC 456414..457601 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21997.01 Da        Isoelectric Point: 5.0177

>NTDB_id=638253 NDQ80_RS02340 WP_003699626.1 452021..452632(+) (pilV) [Neisseria gonorrhoeae strain 10529]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTPSAVDGKFTLDAEKSKAQLAEEQLKRFSYELKNALPDAVGIHYAVCKDSSGNEPTLSDSGVFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLGVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=638253 NDQ80_RS02340 WP_003699626.1 452021..452632(+) (pilV) [Neisseria gonorrhoeae strain 10529]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTGCAGCTGCGGACGGTCGCTTCCGTCAGGGAAGCGGAGACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGATAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACCATCAGCTGTGGATGGTAAGTTTACGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTCGGTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAACGAGCCGACATTGTCCGACAGCGGTGTTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGGGGTGAG
CGGCGGCAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

87.44

100

0.892
  pilV/pilI Neisseria gonorrhoeae MS11

82.759

100

0.828