Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | T285_RS00035 | Genome accession | NC_022909 |
| Coordinates | 9213..9731 (+) | Length | 172 a.a. |
| NCBI ID | WP_023598997.1 | Uniprot ID | A0A7D9N424 |
| Organism | Lactobacillus johnsonii N6.2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4213..14731
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| T285_RS00020 (T285_00025) | gyrB | 4235..6202 (+) | 1968 | WP_023598995.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| T285_RS00025 (T285_00030) | gyrA | 6213..8696 (+) | 2484 | WP_023598996.1 | DNA gyrase subunit A | - |
| T285_RS00030 (T285_00035) | rpsF | 8883..9179 (+) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| T285_RS00035 (T285_00040) | ssb | 9213..9731 (+) | 519 | WP_023598997.1 | single-stranded DNA-binding protein | Machinery gene |
| T285_RS00040 (T285_00045) | rpsR | 9756..9992 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| T285_RS00045 (T285_00050) | - | 10086..11003 (+) | 918 | WP_011161252.1 | magnesium transporter CorA family protein | - |
| T285_RS00050 (T285_00055) | - | 11111..13129 (+) | 2019 | WP_023598998.1 | DHH family phosphoesterase | - |
| T285_RS00055 (T285_00060) | rplI | 13141..13596 (+) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18570.30 Da Isoelectric Point: 4.7531
>NTDB_id=63818 T285_RS00035 WP_023598997.1 9213..9731(+) (ssb) [Lactobacillus johnsonii N6.2]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=63818 T285_RS00035 WP_023598997.1 9213..9731(+) (ssb) [Lactobacillus johnsonii N6.2]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACGTCAAAAGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCTCCAAGCATGAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACGTCAAAAGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCTCCAAGCATGAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |