Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LQ249_RS19345 Genome accession   NZ_CP089551
Coordinates   4316352..4318565 (-) Length   737 a.a.
NCBI ID   WP_232565816.1    Uniprot ID   -
Organism   Pseudomonas sp. 7-41     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4311352..4323565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ249_RS19310 (LQ249_19310) murB 4311722..4312741 (-) 1020 WP_017848009.1 UDP-N-acetylmuramate dehydrogenase -
  LQ249_RS19315 (LQ249_19315) - 4312738..4313202 (-) 465 WP_108525115.1 low molecular weight protein-tyrosine-phosphatase -
  LQ249_RS19320 (LQ249_19320) kdsB 4313202..4313966 (-) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LQ249_RS19325 (LQ249_19325) - 4313963..4314148 (-) 186 WP_003174668.1 Trm112 family protein -
  LQ249_RS19330 (LQ249_19330) lpxK 4314172..4315182 (-) 1011 WP_046382926.1 tetraacyldisaccharide 4'-kinase -
  LQ249_RS19335 (LQ249_19335) - 4315182..4315610 (-) 429 WP_046382925.1 biopolymer transporter ExbD -
  LQ249_RS19340 (LQ249_19340) exbB 4315607..4316242 (-) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LQ249_RS19345 (LQ249_19345) comA 4316352..4318565 (-) 2214 WP_232565816.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LQ249_RS19350 (LQ249_19350) - 4318713..4319228 (+) 516 WP_017848016.1 DUF2062 domain-containing protein -
  LQ249_RS19355 (LQ249_19355) - 4319232..4320602 (-) 1371 WP_232565817.1 sensor histidine kinase -
  LQ249_RS19360 (LQ249_19360) - 4320589..4321317 (-) 729 WP_057004412.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79780.54 Da        Isoelectric Point: 10.1353

>NTDB_id=638093 LQ249_RS19345 WP_232565816.1 4316352..4318565(-) (comA) [Pseudomonas sp. 7-41]
MFALALGLLALRFLPALPPAGMLLALAVVALMLLPFRTYPLAFFLFGLCWACVSAQWALDDRLRPPLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAAL
ARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTA
LLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAEVPMGYWLVSLVGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
EPVPHGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAAVA
RGLSIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHVQANGERLLLTGDIDRAAEQAFL
ASTLAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGAQVYDSAEQGAVRLRLGAFA
PPIVARSQRRFWREALP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=638093 LQ249_RS19345 WP_232565816.1 4316352..4318565(-) (comA) [Pseudomonas sp. 7-41]
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGCCCGCCGGGATGCTGTTGGCGCTGGC
AGTGGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGCGCAGTGGGCGCTGGATGACCGCTTGCGTCCGCCGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGACAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGCAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GCCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGTGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAATGCTTGGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGGGCG
CGAGGCGGGGCTGGCGGCCCTGGTGCTGGGGGACGGCTCTGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACACCG
GCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTATGCGCTCGTCGCCGCTTTG
GCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCATGTGGCCTGGCGTTTACCGCGGCGTTGGGGTA
CGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGCGTT
TCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGTGTGCTGATCCTTGAGCCGTTGGCCAGCTTGCAG
CCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGCCGCTGGAGTGCTTG
GCAGGCATGGACCCGCCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTGCTGGTGCTGGGTTTGCCCATCAGCC
TCAGTGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACGGCA
TTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGACGGCTTGTTCAACGCCCTGGC
GCTGCTGGCGGGGCAATTGCCCGCGTGGATACCGGCCGAGGTGCCCATGGGCTATTGGCTGGTTAGCCTGGTCGGTGCGG
TGTTGCTGTTGCTGCCCAAGGGTGTGCCGTTTCGGTTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCGCGC
GAGCCGGTGCCCCACGGGCAGGTGGACGTACTGCAGTTGGATGTCGGGCAGGGGCTGGCGTTGATCCTGCGCACCCGCCA
TCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGAAGA
GGCTTGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCATGCCGGCGGTGCGGCGGCTGTCGCC
CGTGGGCTGTCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTATCAG
CGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTGTGGCAATGGCCAGACGCAGTTGATGGCAACCCCAAATCCT
GTGTATTGCACGTACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCAGAGCAGGCGTTTCTG
GCCTCGACCCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTTTCT
GCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAAGTGGTGG
AGCGCTATCAAGCGTTGGGAGCGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTCGCG
CCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(18-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-661)

Competence protein (Competence)

(194-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.918

97.558

0.594
  comA Ralstonia pseudosolanacearum GMI1000

34.777

100

0.37