Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LUA14_RS18555 Genome accession   NZ_CP089530
Coordinates   3660637..3662022 (-) Length   461 a.a.
NCBI ID   WP_124692700.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3655637..3667022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS18520 (LUA14_18520) flgL 3655812..3656729 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  LUA14_RS18525 (LUA14_18525) flgK 3656741..3658258 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  LUA14_RS18530 (LUA14_18530) - 3658274..3658756 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LUA14_RS18535 (LUA14_18535) flgM 3658771..3659037 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LUA14_RS18540 (LUA14_18540) - 3659107..3659526 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  LUA14_RS18545 (LUA14_18545) comFC 3659600..3660289 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  LUA14_RS18550 (LUA14_18550) - 3660295..3660579 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  LUA14_RS18555 (LUA14_18555) comFA 3660637..3662022 (-) 1386 WP_124692700.1 DEAD/DEAH box helicase Machinery gene
  LUA14_RS18560 (LUA14_18560) - 3662131..3662979 (-) 849 WP_003151387.1 DegV family protein -
  LUA14_RS18565 (LUA14_18565) degU 3663077..3663766 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LUA14_RS18570 (LUA14_18570) degS 3663843..3665006 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LUA14_RS18575 (LUA14_18575) - 3665229..3665876 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52722.21 Da        Isoelectric Point: 10.1794

>NTDB_id=638003 LUA14_RS18555 WP_124692700.1 3660637..3662022(-) (comFA) [Bacillus amyloliquefaciens strain LS1-002-014s]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAYENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=638003 LUA14_RS18555 WP_124692700.1 3660637..3662022(-) (comFA) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAGGCCTATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACAGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625
  comFA Latilactobacillus sakei subsp. sakei 23K

39.952

90.672

0.362