Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LUA14_RS18545 Genome accession   NZ_CP089530
Coordinates   3659600..3660289 (-) Length   229 a.a.
NCBI ID   WP_199022660.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3654600..3665289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS18510 (LUA14_18510) fliW 3654691..3655122 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  LUA14_RS18515 (LUA14_18515) - 3655152..3655721 (-) 570 WP_007407476.1 DUF6470 family protein -
  LUA14_RS18520 (LUA14_18520) flgL 3655812..3656729 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  LUA14_RS18525 (LUA14_18525) flgK 3656741..3658258 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  LUA14_RS18530 (LUA14_18530) - 3658274..3658756 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LUA14_RS18535 (LUA14_18535) flgM 3658771..3659037 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LUA14_RS18540 (LUA14_18540) - 3659107..3659526 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  LUA14_RS18545 (LUA14_18545) comFC 3659600..3660289 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  LUA14_RS18550 (LUA14_18550) - 3660295..3660579 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  LUA14_RS18555 (LUA14_18555) comFA 3660637..3662022 (-) 1386 WP_124692700.1 DEAD/DEAH box helicase Machinery gene
  LUA14_RS18560 (LUA14_18560) - 3662131..3662979 (-) 849 WP_003151387.1 DegV family protein -
  LUA14_RS18565 (LUA14_18565) degU 3663077..3663766 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LUA14_RS18570 (LUA14_18570) degS 3663843..3665006 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25243.86 Da        Isoelectric Point: 8.2927

>NTDB_id=638002 LUA14_RS18545 WP_199022660.1 3659600..3660289(-) (comFC) [Bacillus amyloliquefaciens strain LS1-002-014s]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRRNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=638002 LUA14_RS18545 WP_199022660.1 3659600..3660289(-) (comFC) [Bacillus amyloliquefaciens strain LS1-002-014s]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCGAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594