Detailed information NTG0637910

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LUU92_RS04175
• Genome accession: NZ_CP089519
• Coordinates: 957055..957921 (-)
• Length: 288 a.a.
• NCBI ID: WP_257103197.1
• Uniprot ID: -
• Organism: Pseudomonas extremorientalis strain 1502IPR-01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 952055..962921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUU92_RS04140 (LUU92_04135)	-	952950..954248 (-)	1299	WP_071491077.1	NAD(P)/FAD-dependent oxidoreductase	-
LUU92_RS04145 (LUU92_04140)	-	954309..954482 (-)	174	WP_046034083.1	DUF3094 family protein	-
LUU92_RS04150 (LUU92_04145)	-	954539..955168 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
LUU92_RS04155 (LUU92_04150)	-	955270..955959 (+)	690	WP_257103195.1	energy-coupling factor ABC transporter permease	-
LUU92_RS04160 (LUU92_04155)	-	956026..956241 (+)	216	WP_003171680.1	hypothetical protein	-
LUU92_RS04165 (LUU92_04160)	yacG	956238..956438 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
LUU92_RS04170 (LUU92_04165)	coaE	956435..957058 (-)	624	WP_257103196.1	dephospho-CoA kinase	-
LUU92_RS04175 (LUU92_04170)	pilD	957055..957921 (-)	867	WP_257103197.1	A24 family peptidase	Machinery gene
LUU92_RS04180 (LUU92_04175)	pilC	957918..959126 (-)	1209	WP_222540967.1	type II secretion system F family protein	Machinery gene
LUU92_RS04185 (LUU92_04180)	-	959320..959742 (+)	423	WP_083351537.1	pilin	-
LUU92_RS04190 (LUU92_04185)	-	959778..961178 (+)	1401	WP_257103198.1	O-antigen ligase	-
LUU92_RS04200 (LUU92_04195)	-	961444..961749 (+)	306	WP_033903347.1	DUF6388 family protein	-
LUU92_RS04205 (LUU92_04200)	nadC	961797..962645 (-)	849	WP_071491085.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31721.82 Da
• Isoelectric Point: 7.3655

>NTDB_id=637910 LUU92_RS04175 WP_257103197.1 957055..957921(-) (pilD) [Pseudomonas extremorientalis strain 1502IPR-01]
MSLLLGEHPWAFVAIASVLGLIVGSFLNVLVWRLPKMLEREWRAQANEVLGLPAEPAGPTYNLMQPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISIRYPLTELVCSLISAWVAWHFGVGWQAGMVMVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNSLGLLTTLADALWGAVIGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLVGVF
VGLILMRLRNTLASAPMPFGPYLATAGWIALLWGGQISDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=637910 LUU92_RS04175 WP_257103197.1 957055..957921(-) (pilD) [Pseudomonas extremorientalis strain 1502IPR-01]
TTGAGCCTGCTGCTGGGCGAGCATCCCTGGGCGTTTGTTGCGATAGCGTCGGTGCTGGGGCTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAGCGGGAATGGCGCGCCCAGGCCAATGAAGTGCTGGGCTTGCCAG
CAGAACCAGCCGGGCCGACCTACAACCTGATGCAGCCCAACTCCTGCTGCCCACACTGCAACCATCCCATACGCCCATGG
GAAAATATCCCGCTGCTCAGCTACCTGTTCCTGCGCGGCCGCTGCGCGCATTGCCAAGGGGCGATCAGCATCCGCTACCC
CCTCACGGAACTGGTGTGCAGCTTGATCTCGGCCTGGGTGGCCTGGCATTTCGGAGTTGGCTGGCAGGCAGGAATGGTGA
TGGTGCTGAGTTGGGGGTTGTTGGCGATGAGCCTGATCGACGCCGACCATCAACTGCTGCCGGATGTGCTGGTAATGCCG
CTGCTGTGGCTGGGACTGATCGTCAACAGTCTCGGCCTGCTGACAACATTGGCCGACGCCCTGTGGGGCGCCGTGATTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGTTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCCACGGCGACTTCAAGT
TGCTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGATGACGCTGTTGATGGCGTCACTGGTCGGGGTATTT
GTCGGCTTGATCCTGATGCGCCTGCGCAACACCCTGGCGTCGGCACCGATGCCTTTTGGACCGTATCTGGCGACTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAAGCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.33	96.875	0.507
pilD	Vibrio campbellii strain DS40M4	48.929	97.222	0.476
pilD	Neisseria gonorrhoeae MS11	50	93.75	0.469
pilD	Acinetobacter nosocomialis M2	48.352	94.792	0.458
pilD	Acinetobacter baumannii D1279779	48.352	94.792	0.458