Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LUS72_RS20690 Genome accession   NZ_CP089518
Coordinates   3996850..3998589 (-) Length   579 a.a.
NCBI ID   WP_097831045.1    Uniprot ID   -
Organism   Bacillus cereus strain PT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3991850..4003589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS20665 - 3992735..3992968 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  LUS72_RS20670 - 3993020..3993748 (-) 729 WP_097830738.1 glycerophosphodiester phosphodiesterase -
  LUS72_RS20675 - 3993799..3993945 (+) 147 WP_097830737.1 YycC family protein -
  LUS72_RS20680 spo0A 3994357..3995151 (-) 795 WP_000411416.1 sporulation transcription factor Spo0A Regulator
  LUS72_RS20685 spoIVB 3995439..3996731 (-) 1293 WP_264448227.1 SpoIVB peptidase -
  LUS72_RS20690 recN 3996850..3998589 (-) 1740 WP_097831045.1 DNA repair protein RecN Machinery gene
  LUS72_RS20695 argR 3998860..3999309 (-) 450 WP_001032581.1 arginine repressor ArgR -
  LUS72_RS20700 - 3999452..4000291 (-) 840 WP_097830735.1 TlyA family RNA methyltransferase -
  LUS72_RS20705 dxs 4000295..4002187 (-) 1893 WP_097830734.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LUS72_RS20710 ispA 4002496..4003389 (-) 894 WP_097830733.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65857.94 Da        Isoelectric Point: 4.9327

>NTDB_id=637890 LUS72_RS20690 WP_097831045.1 3996850..3998589(-) (recN) [Bacillus cereus strain PT1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGDRIVKQL
DIYQNVYGDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DSQGLDHVRNAMSQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLKELESVILKEATLLSDMRHELADHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=637890 LUS72_RS20690 WP_097831045.1 3996850..3998589(-) (recN) [Bacillus cereus strain PT1]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCCGGAAAATCGATTATTATTGATGCGATTAGTTTGCTTGTTGGCGGCCGTGGTTCAGCGGAGT
TTGTTCGATATGGAACAGAAAAGGCTGAAATAGAGGGTTTATTTTATGTAGAAGATGATAAGCATCCGTGTATTGCAAAG
GCAGAAGAATTAGATATAGAAATAGAAGACGGCATGATTATTTTGAAACGTGATATCGCTGCGAACGGAAAAAGTGTATG
CCGTGTAAATGGGAAGCTTGTTACACTTAGTATATTAAAAGAGATTGGAAAAACGCTTGTTGATATACATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTAGATCATTTTGATGGAGATCGTATTGTTAAGCAATTA
GACATATATCAGAACGTATACGGAGACTATGAAAAATTAAAAAAACAGTTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCTCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCAGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTGAAAATATCCAATTTTGAAAAGATTTATAAAGCGTTAGGGGATGCGTATCGTTCGTTGAGTGGG
GACAGCCAAGGGTTAGATCATGTAAGGAATGCAATGAGCCAAATGGAGAGTATTACGCATTTAGATGAGGCGTATCAAGA
AAACCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCATATCAGCTTAGAGAAAAGTTAGATATGATGG
AATATGATCCGAAACGTTTAGATGAAATTGAAACAAGGTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACAATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGCTAAAGGAATTAGAAAGTGTTATTTTAAAAGAAGCAACGTTGTTAAGTGATATGCGTCATGAACTGG
CAGACCATCTTACAAACGCTATTCATCAAGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATAATG
AAGAGGGAAGGAAATGCAGAAGAACCTCTTGTAGAAGGAACACCGGTGAAACTTACGGCGGATGGCTATGATCACGTGGA
GTTTTATATTTCAACGAACCCTGGTGAACCGTTAAAGCCGCTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTGGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCTTCAGTTATTTTTGATGAAGTGGATACAGGTGTGAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATCTATCGTGTATCGGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAGGTAGCTTCAATGGCGGACTCGCATTTATTTATTAGAAAACAAGTGGCGAATGATCGGACGATTACATCTGTTACGG
TGCTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGGATGATTTCTGGTGTAGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAGTTACTTACGCAAGCACATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599