Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY95_RS14565 Genome accession   NZ_CP089506
Coordinates   2898386..2898781 (+) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain 0.0066_IIV_ST239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2893386..2903781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY95_RS14540 - 2894329..2894733 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUY95_RS14545 - 2895612..2895845 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUY95_RS14550 murA 2895956..2897221 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY95_RS14555 fabZ 2897255..2897695 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY95_RS14560 - 2897752..2898192 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUY95_RS14565 ssb 2898386..2898781 (+) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  LUY95_RS14570 sceD 2899170..2899865 (+) 696 WP_000752015.1 lytic transglycosylase SceD -
  LUY95_RS14575 tenA 2900390..2901079 (+) 690 WP_000396068.1 thiaminase II -
  LUY95_RS14580 thiD 2901072..2901902 (+) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY95_RS14585 thiM 2901886..2902677 (+) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  LUY95_RS14590 thiE 2902679..2903320 (+) 642 WP_000483150.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=637798 LUY95_RS14565 WP_000932696.1 2898386..2898781(+) (ssb) [Staphylococcus aureus strain 0.0066_IIV_ST239]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637798 LUY95_RS14565 WP_000932696.1 2898386..2898781(+) (ssb) [Staphylococcus aureus strain 0.0066_IIV_ST239]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985