Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUY95_RS08595 Genome accession   NZ_CP089506
Coordinates   1665764..1666333 (-) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0.0066_IIV_ST239     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660764..1671333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY95_RS08555 - 1661238..1661846 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUY95_RS08560 rplL 1662021..1662389 (-) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  LUY95_RS08565 rplJ 1662432..1662932 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUY95_RS08570 rplA 1663207..1663896 (-) 690 WP_001074620.1 50S ribosomal protein L1 -
  LUY95_RS08575 rplK 1664104..1664526 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUY95_RS08580 nusG 1664707..1665255 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUY95_RS08585 secE 1665268..1665450 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LUY95_RS08590 rpmG 1665506..1665649 (-) 144 WP_001791441.1 50S ribosomal protein L33 -
  LUY95_RS08595 sigH 1665764..1666333 (-) 570 WP_000872867.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUY95_RS08600 - 1666414..1666938 (-) 525 WP_000664740.1 NYN domain-containing protein -
  LUY95_RS08605 rlmB 1666938..1667684 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUY95_RS08610 - 1667692..1668096 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  LUY95_RS08615 cysS 1668089..1669489 (-) 1401 WP_000631983.1 cysteine--tRNA ligase -
  LUY95_RS08620 cysE 1669473..1670120 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=637786 LUY95_RS08595 WP_000872867.1 1665764..1666333(-) (sigH) [Staphylococcus aureus strain 0.0066_IIV_ST239]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637786 LUY95_RS08595 WP_000872867.1 1665764..1666333(-) (sigH) [Staphylococcus aureus strain 0.0066_IIV_ST239]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979