Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   OCL42_RS02355 Genome accession   NZ_CP106807
Coordinates   454125..454733 (+) Length   202 a.a.
NCBI ID   WP_215318018.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10736     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449125..459733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL42_RS02330 (OCL42_02330) - 449421..450002 (-) 582 WP_003701053.1 superoxide dismutase -
  OCL42_RS02335 (OCL42_02335) dnaB 450165..451571 (+) 1407 WP_241532347.1 replicative DNA helicase -
  OCL42_RS02340 (OCL42_02340) pilH 451879..452544 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL42_RS02345 (OCL42_02345) pilV/pilI 452573..453181 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Regulator
  OCL42_RS02350 (OCL42_02350) pilJ 453178..454146 (+) 969 WP_263074907.1 PilW family protein Machinery gene
  OCL42_RS02355 (OCL42_02355) pilK 454125..454733 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL42_RS02360 (OCL42_02360) pilL 454735..455208 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL42_RS02365 (OCL42_02365) - 455820..456265 (-) 446 Protein_463 AzlC family ABC transporter permease -
  OCL42_RS02370 (OCL42_02370) dut 456431..456883 (+) 453 WP_260236890.1 dUTP diphosphatase -
  OCL42_RS02375 (OCL42_02375) dapC 456961..458148 (+) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -
  OCL42_RS02380 (OCL42_02380) yaaA 458459..459238 (+) 780 WP_260236892.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21884.77 Da        Isoelectric Point: 8.4516

>NTDB_id=637759 OCL42_RS02355 WP_215318018.1 454125..454733(+) (pilK) [Neisseria gonorrhoeae strain 10736]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCGKGLCTAVNVRTNNANEESFGNIVVQSTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=637759 OCL42_RS02355 WP_215318018.1 454125..454733(+) (pilK) [Neisseria gonorrhoeae strain 10736]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGCCTGTGTACCGCAGTGAATGTACGGACAAATAATGCTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAAGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGCACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

94.581

100

0.95