Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OCL42_RS02340 Genome accession   NZ_CP106807
Coordinates   451879..452544 (+) Length   221 a.a.
NCBI ID   WP_263055817.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10736     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446879..457544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL42_RS02315 (OCL42_02315) cysT 446974..447810 (-) 837 WP_260236887.1 sulfate ABC transporter permease subunit CysT -
  OCL42_RS02320 (OCL42_02320) - 447991..448323 (+) 333 WP_003687908.1 hypothetical protein -
  OCL42_RS02325 (OCL42_02325) - 448682..449191 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OCL42_RS02330 (OCL42_02330) - 449421..450002 (-) 582 WP_003701053.1 superoxide dismutase -
  OCL42_RS02335 (OCL42_02335) dnaB 450165..451571 (+) 1407 WP_241532347.1 replicative DNA helicase -
  OCL42_RS02340 (OCL42_02340) pilH 451879..452544 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL42_RS02345 (OCL42_02345) pilV/pilI 452573..453181 (+) 609 WP_033910489.1 type IV pilus modification protein PilV Regulator
  OCL42_RS02350 (OCL42_02350) pilJ 453178..454146 (+) 969 WP_263074907.1 PilW family protein Machinery gene
  OCL42_RS02355 (OCL42_02355) pilK 454125..454733 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL42_RS02360 (OCL42_02360) pilL 454735..455208 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL42_RS02365 (OCL42_02365) - 455820..456265 (-) 446 Protein_463 AzlC family ABC transporter permease -
  OCL42_RS02370 (OCL42_02370) dut 456431..456883 (+) 453 WP_260236890.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24532.77 Da        Isoelectric Point: 9.1685

>NTDB_id=637756 OCL42_RS02340 WP_263055817.1 451879..452544(+) (pilH) [Neisseria gonorrhoeae strain 10736]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYSSD
QDLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLINSSGRVEVCRKNDTRAVCKHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=637756 OCL42_RS02340 WP_263055817.1 451879..452544(+) (pilH) [Neisseria gonorrhoeae strain 10736]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTCATCCGAT
CAGGATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATCAATGA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.545

99.548

0.941