Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUZ01_RS13775 Genome accession   NZ_CP089504
Coordinates   2775033..2775428 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3581_IA_ST247     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2770033..2780428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ01_RS13745 - 2771291..2771695 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUZ01_RS13750 - 2772033..2772125 (+) 93 WP_001790611.1 hypothetical protein -
  LUZ01_RS13755 - 2772257..2772490 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUZ01_RS13760 murA 2772601..2773866 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUZ01_RS13765 fabZ 2773900..2774340 (+) 441 WP_407519730.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUZ01_RS13770 - 2774399..2774839 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUZ01_RS13775 ssb 2775033..2775428 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUZ01_RS13780 sceD 2775817..2776512 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUZ01_RS13785 tenA 2776898..2777587 (+) 690 WP_000396077.1 thiaminase II -
  LUZ01_RS13790 thiD 2777580..2778410 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUZ01_RS13795 thiM 2778394..2779185 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUZ01_RS13800 thiE 2779187..2779828 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637755 LUZ01_RS13775 WP_000932694.1 2775033..2775428(+) (ssb) [Staphylococcus aureus strain 3581_IA_ST247]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637755 LUZ01_RS13775 WP_000932694.1 2775033..2775428(+) (ssb) [Staphylococcus aureus strain 3581_IA_ST247]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992