Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUZ01_RS07315 Genome accession   NZ_CP089504
Coordinates   1472760..1473329 (-) Length   189 a.a.
NCBI ID   WP_023487095.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3581_IA_ST247     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1467760..1478329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ01_RS07275 - 1468234..1468842 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUZ01_RS07280 rplL 1469017..1469385 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUZ01_RS07285 rplJ 1469428..1469928 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUZ01_RS07290 rplA 1470200..1470892 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUZ01_RS07295 rplK 1471100..1471522 (-) 423 WP_001085794.1 50S ribosomal protein L11 -
  LUZ01_RS07300 nusG 1471703..1472251 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUZ01_RS07305 secE 1472264..1472446 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUZ01_RS07310 rpmG 1472502..1472645 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUZ01_RS07315 sigH 1472760..1473329 (-) 570 WP_023487095.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUZ01_RS07320 - 1473410..1473934 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUZ01_RS07325 rlmB 1473934..1474680 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUZ01_RS07330 - 1474688..1475092 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUZ01_RS07335 cysS 1475085..1476485 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUZ01_RS07340 cysE 1476469..1477116 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23000.85 Da        Isoelectric Point: 9.4170

>NTDB_id=637744 LUZ01_RS07315 WP_023487095.1 1472760..1473329(-) (sigH) [Staphylococcus aureus strain 3581_IA_ST247]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKAIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637744 LUZ01_RS07315 WP_023487095.1 1472760..1473329(-) (sigH) [Staphylococcus aureus strain 3581_IA_ST247]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGCGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979