Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LUZ01_RS05355 Genome accession   NZ_CP089504
Coordinates   1075270..1076256 (-) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3581_IA_ST247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070270..1081256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ01_RS05330 - 1070530..1070877 (-) 348 WP_001242102.1 hypothetical protein -
  LUZ01_RS05335 - 1071063..1071656 (+) 594 WP_407519938.1 CYTH domain-containing protein -
  LUZ01_RS05340 - 1071760..1072125 (+) 366 WP_000214065.1 truncated hemoglobin YjbI -
  LUZ01_RS05345 yjbH 1072148..1072954 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  LUZ01_RS05350 pepF 1073414..1075222 (-) 1809 WP_023487078.1 oligoendopeptidase F -
  LUZ01_RS05355 coiA 1075270..1076256 (-) 987 WP_000959287.1 competence protein CoiA Machinery gene
  LUZ01_RS05360 mecA 1076377..1077096 (-) 720 WP_001217722.1 adaptor protein MecA -
  LUZ01_RS05365 - 1077362..1078534 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  LUZ01_RS05370 spxA 1078799..1079194 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  LUZ01_RS05375 trpS 1079489..1080478 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=637739 LUZ01_RS05355 WP_000959287.1 1075270..1076256(-) (coiA) [Staphylococcus aureus strain 3581_IA_ST247]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=637739 LUZ01_RS05355 WP_000959287.1 1075270..1076256(-) (coiA) [Staphylococcus aureus strain 3581_IA_ST247]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979