Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY96_RS14310 Genome accession   NZ_CP089502
Coordinates   2845636..2846031 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3488_VV_ ST8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2840636..2851031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY96_RS14280 - 2841894..2842298 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUY96_RS14285 - 2842636..2842728 (+) 93 WP_001790611.1 hypothetical protein -
  LUY96_RS14290 - 2842860..2843093 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUY96_RS14295 murA 2843204..2844469 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY96_RS14300 fabZ 2844503..2844943 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY96_RS14305 - 2845002..2845442 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUY96_RS14310 ssb 2845636..2846031 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY96_RS14315 sceD 2846420..2847115 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUY96_RS14320 tenA 2847501..2848190 (+) 690 WP_000396077.1 thiaminase II -
  LUY96_RS14325 thiD 2848183..2849013 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY96_RS14330 thiM 2848997..2849788 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUY96_RS14335 thiE 2849790..2850431 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637714 LUY96_RS14310 WP_000932694.1 2845636..2846031(+) (ssb) [Staphylococcus aureus strain 3488_VV_ ST8]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637714 LUY96_RS14310 WP_000932694.1 2845636..2846031(+) (ssb) [Staphylococcus aureus strain 3488_VV_ ST8]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992