Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUY96_RS08145 Genome accession   NZ_CP089502
Coordinates   1596470..1597039 (-) Length   189 a.a.
NCBI ID   WP_061642116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3488_VV_ ST8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591470..1602039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY96_RS08105 - 1591944..1592552 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUY96_RS08110 rplL 1592727..1593095 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUY96_RS08115 rplJ 1593138..1593638 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUY96_RS08120 rplA 1593910..1594602 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUY96_RS08125 rplK 1594810..1595232 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUY96_RS08130 nusG 1595413..1595961 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUY96_RS08135 secE 1595974..1596156 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUY96_RS08140 rpmG 1596212..1596355 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUY96_RS08145 sigH 1596470..1597039 (-) 570 WP_061642116.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUY96_RS08150 - 1597120..1597644 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUY96_RS08155 rlmB 1597644..1598390 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUY96_RS08160 - 1598398..1598802 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUY96_RS08165 cysS 1598795..1600195 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUY96_RS08170 cysE 1600179..1600826 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22970.87 Da        Isoelectric Point: 9.5313

>NTDB_id=637702 LUY96_RS08145 WP_061642116.1 1596470..1597039(-) (sigH) [Staphylococcus aureus strain 3488_VV_ ST8]
MKYDLTTQDSTIKRNNAINDKGFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637702 LUY96_RS08145 WP_061642116.1 1596470..1597039(-) (sigH) [Staphylococcus aureus strain 3488_VV_ ST8]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGGCTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979