Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   OCL39_RS05975 Genome accession   NZ_CP106805
Coordinates   1155433..1156041 (-) Length   202 a.a.
NCBI ID   WP_215318018.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10743     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150433..1161041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL39_RS05950 (OCL39_05950) yaaA 1150928..1151707 (-) 780 WP_260236892.1 peroxide stress protein YaaA -
  OCL39_RS05955 (OCL39_05955) dapC 1152018..1153205 (-) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -
  OCL39_RS05960 (OCL39_05960) dut 1153283..1153735 (-) 453 WP_260236890.1 dUTP diphosphatase -
  OCL39_RS05965 (OCL39_05965) - 1153901..1154346 (+) 446 Protein_1145 AzlC family ABC transporter permease -
  OCL39_RS05970 (OCL39_05970) pilL 1154958..1155431 (-) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL39_RS05975 (OCL39_05975) pilK 1155433..1156041 (-) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL39_RS05980 (OCL39_05980) pilJ 1156020..1156988 (-) 969 WP_263055816.1 PilW family protein Machinery gene
  OCL39_RS05985 (OCL39_05985) pilV/pilI 1156985..1157593 (-) 609 WP_033910489.1 type IV pilus modification protein PilV Regulator
  OCL39_RS05990 (OCL39_05990) pilH 1157622..1158287 (-) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL39_RS05995 (OCL39_05995) dnaB 1158595..1160001 (-) 1407 WP_241532347.1 replicative DNA helicase -
  OCL39_RS06000 (OCL39_06000) - 1160164..1160745 (+) 582 WP_003701053.1 superoxide dismutase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21884.77 Da        Isoelectric Point: 8.4516

>NTDB_id=637698 OCL39_RS05975 WP_215318018.1 1155433..1156041(-) (pilK) [Neisseria gonorrhoeae strain 10743]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCGKGLCTAVNVRTNNANEESFGNIVVQSTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=637698 OCL39_RS05975 WP_215318018.1 1155433..1156041(-) (pilK) [Neisseria gonorrhoeae strain 10743]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGCCTGTGTACCGCAGTGAATGTACGGACAAATAATGCTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAAGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGCACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

94.581

100

0.95