Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OCL39_RS05990 Genome accession   NZ_CP106805
Coordinates   1157622..1158287 (-) Length   221 a.a.
NCBI ID   WP_263055817.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10743     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1152622..1163287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL39_RS05960 (OCL39_05960) dut 1153283..1153735 (-) 453 WP_260236890.1 dUTP diphosphatase -
  OCL39_RS05965 (OCL39_05965) - 1153901..1154346 (+) 446 Protein_1145 AzlC family ABC transporter permease -
  OCL39_RS05970 (OCL39_05970) pilL 1154958..1155431 (-) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  OCL39_RS05975 (OCL39_05975) pilK 1155433..1156041 (-) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCL39_RS05980 (OCL39_05980) pilJ 1156020..1156988 (-) 969 WP_263055816.1 PilW family protein Machinery gene
  OCL39_RS05985 (OCL39_05985) pilV/pilI 1156985..1157593 (-) 609 WP_033910489.1 type IV pilus modification protein PilV Regulator
  OCL39_RS05990 (OCL39_05990) pilH 1157622..1158287 (-) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OCL39_RS05995 (OCL39_05995) dnaB 1158595..1160001 (-) 1407 WP_241532347.1 replicative DNA helicase -
  OCL39_RS06000 (OCL39_06000) - 1160164..1160745 (+) 582 WP_003701053.1 superoxide dismutase -
  OCL39_RS06005 (OCL39_06005) - 1160975..1161484 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OCL39_RS06010 (OCL39_06010) - 1161843..1162175 (-) 333 WP_003687908.1 hypothetical protein -
  OCL39_RS06015 (OCL39_06015) cysT 1162356..1163192 (+) 837 WP_260236887.1 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24532.77 Da        Isoelectric Point: 9.1685

>NTDB_id=637701 OCL39_RS05990 WP_263055817.1 1157622..1158287(-) (pilH) [Neisseria gonorrhoeae strain 10743]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYSSD
QDLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLINSSGRVEVCRKNDTRAVCKHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=637701 OCL39_RS05990 WP_263055817.1 1157622..1158287(-) (pilH) [Neisseria gonorrhoeae strain 10743]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTCATCCGAT
CAGGATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATCAATGA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.545

99.548

0.941