Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LUY96_RS04515 Genome accession   NZ_CP089502
Coordinates   893537..894223 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain 3488_VV_ ST8     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 888537..899223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY96_RS04495 rpsT 889451..889702 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LUY96_RS04500 holA 889747..890721 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  LUY96_RS04505 comEC 890778..892979 (-) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUY96_RS04510 - 892984..893445 (-) 462 WP_000439693.1 ComE operon protein 2 -
  LUY96_RS04515 comEA 893537..894223 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  LUY96_RS04520 - 894263..894979 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LUY96_RS04525 rsfS 894982..895335 (-) 354 WP_001088022.1 ribosome silencing factor -
  LUY96_RS04530 yqeK 895336..895920 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LUY96_RS04535 nadD 895910..896479 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LUY96_RS04540 yhbY 896482..896772 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  LUY96_RS04545 aroE 896776..897582 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  LUY96_RS04550 yqeH 897596..898696 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=637693 LUY96_RS04515 WP_001792568.1 893537..894223(-) (comEA) [Staphylococcus aureus strain 3488_VV_ ST8]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=637693 LUY96_RS04515 WP_001792568.1 893537..894223(-) (comEA) [Staphylococcus aureus strain 3488_VV_ ST8]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969