Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY93_RS09965 Genome accession   NZ_CP089500
Coordinates   1941552..1941947 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3144_IIV_ST8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1936552..1946947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY93_RS09940 thiE 1937152..1937793 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  LUY93_RS09945 thiM 1937795..1938586 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUY93_RS09950 thiD 1938570..1939400 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY93_RS09955 tenA 1939393..1940082 (-) 690 WP_000396077.1 thiaminase II -
  LUY93_RS09960 sceD 1940468..1941163 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUY93_RS09965 ssb 1941552..1941947 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY93_RS09970 - 1942141..1942581 (+) 441 WP_000846746.1 YwpF-like family protein -
  LUY93_RS09975 fabZ 1942639..1943079 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY93_RS09980 murA 1943113..1944378 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY93_RS09985 - 1944489..1944722 (-) 234 WP_000384523.1 DUF1146 family protein -
  LUY93_RS09990 - 1944854..1944946 (-) 93 WP_001790611.1 hypothetical protein -
  LUY93_RS09995 - 1945284..1945688 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637664 LUY93_RS09965 WP_000932694.1 1941552..1941947(-) (ssb) [Staphylococcus aureus strain 3144_IIV_ST8]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637664 LUY93_RS09965 WP_000932694.1 1941552..1941947(-) (ssb) [Staphylococcus aureus strain 3144_IIV_ST8]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992