Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUY93_RS01470 Genome accession   NZ_CP089500
Coordinates   286756..287325 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3144_IIV_ST8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 281756..292325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY93_RS01445 cysE 282969..283616 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  LUY93_RS01450 cysS 283600..285000 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  LUY93_RS01455 - 284993..285397 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUY93_RS01460 rlmB 285405..286151 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUY93_RS01465 - 286151..286675 (+) 525 WP_000664738.1 NYN domain-containing protein -
  LUY93_RS01470 sigH 286756..287325 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUY93_RS01475 rpmG 287440..287583 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUY93_RS01480 secE 287639..287821 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUY93_RS01485 nusG 287834..288382 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUY93_RS01490 rplK 288563..288985 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUY93_RS01495 rplA 289193..289885 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUY93_RS01500 rplJ 290157..290657 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUY93_RS01505 rplL 290700..291068 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUY93_RS01510 - 291243..291851 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=637633 LUY93_RS01470 WP_000872873.1 286756..287325(+) (sigH) [Staphylococcus aureus strain 3144_IIV_ST8]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637633 LUY93_RS01470 WP_000872873.1 286756..287325(+) (sigH) [Staphylococcus aureus strain 3144_IIV_ST8]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984