Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUZ00_RS11540 Genome accession   NZ_CP089498
Coordinates   2271511..2271906 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain M03/0073_III_ST239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2266511..2276906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ00_RS11515 thiE 2267111..2267752 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  LUZ00_RS11520 thiM 2267754..2268545 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUZ00_RS11525 thiD 2268529..2269359 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUZ00_RS11530 tenA 2269352..2270041 (-) 690 WP_000396077.1 thiaminase II -
  LUZ00_RS11535 sceD 2270427..2271122 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUZ00_RS11540 ssb 2271511..2271906 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUZ00_RS11545 - 2272100..2272540 (+) 441 WP_000846746.1 YwpF-like family protein -
  LUZ00_RS11550 fabZ 2272599..2273039 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUZ00_RS11555 murA 2273073..2274338 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUZ00_RS11560 - 2274449..2274682 (-) 234 WP_000384523.1 DUF1146 family protein -
  LUZ00_RS11565 - 2274814..2274906 (-) 93 WP_001790611.1 hypothetical protein -
  LUZ00_RS11570 - 2275244..2275648 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637625 LUZ00_RS11540 WP_000932694.1 2271511..2271906(-) (ssb) [Staphylococcus aureus strain M03/0073_III_ST239]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637625 LUZ00_RS11540 WP_000932694.1 2271511..2271906(-) (ssb) [Staphylococcus aureus strain M03/0073_III_ST239]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992