Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LUZ00_RS06690 Genome accession   NZ_CP089498
Coordinates   1326184..1327056 (+) Length   290 a.a.
NCBI ID   WP_061642004.1    Uniprot ID   -
Organism   Staphylococcus aureus strain M03/0073_III_ST239     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1321184..1332056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ00_RS06670 sucC 1321299..1322465 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  LUZ00_RS06675 sucD 1322487..1323395 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  LUZ00_RS06680 - 1323622..1324740 (+) 1119 WP_001041662.1 LysM peptidoglycan-binding domain-containing protein -
  LUZ00_RS06685 fmhC 1324768..1326011 (+) 1244 Protein_1309 FemA/FemB family glycyltransferase FmhC -
  LUZ00_RS06690 dprA 1326184..1327056 (+) 873 WP_061642004.1 DNA-processing protein DprA Machinery gene
  LUZ00_RS06695 topA 1327230..1329305 (+) 2076 WP_001548566.1 type I DNA topoisomerase -
  LUZ00_RS06700 trmFO 1329461..1330768 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33577.04 Da        Isoelectric Point: 9.5094

>NTDB_id=637601 LUZ00_RS06690 WP_061642004.1 1326184..1327056(+) (dprA) [Staphylococcus aureus strain M03/0073_III_ST239]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYIQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=637601 LUZ00_RS06690 WP_061642004.1 1326184..1327056(+) (dprA) [Staphylococcus aureus strain M03/0073_III_ST239]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATATCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCTGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993