Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUZ00_RS02765 Genome accession   NZ_CP089498
Coordinates   575080..575649 (+) Length   189 a.a.
NCBI ID   WP_061642116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain M03/0073_III_ST239     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 570080..580649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ00_RS02740 cysE 571293..571940 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  LUZ00_RS02745 cysS 571924..573324 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUZ00_RS02750 - 573317..573721 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUZ00_RS02755 rlmB 573729..574475 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUZ00_RS02760 - 574475..574999 (+) 525 WP_000664738.1 NYN domain-containing protein -
  LUZ00_RS02765 sigH 575080..575649 (+) 570 WP_061642116.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUZ00_RS02770 rpmG 575764..575907 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUZ00_RS02775 secE 575963..576145 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUZ00_RS02780 nusG 576158..576706 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUZ00_RS02785 rplK 576887..577309 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUZ00_RS02790 rplA 577517..578209 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUZ00_RS02795 rplJ 578481..578981 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUZ00_RS02800 rplL 579024..579392 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUZ00_RS02805 - 579567..580175 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22970.87 Da        Isoelectric Point: 9.5313

>NTDB_id=637594 LUZ00_RS02765 WP_061642116.1 575080..575649(+) (sigH) [Staphylococcus aureus strain M03/0073_III_ST239]
MKYDLTTQDSTIKRNNAINDKGFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637594 LUZ00_RS02765 WP_061642116.1 575080..575649(+) (sigH) [Staphylococcus aureus strain M03/0073_III_ST239]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGGCTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979